View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17702_low_8 (Length: 287)
Name: NF17702_low_8
Description: NF17702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17702_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 7737514 - 7737783
Alignment:
| Q |
1 |
tagccaaaaaatacgccgtttatgtaccggacttaattttcttcggtggctcaactaccgataagtcggaccggtcagtggcttttcaagccgagtgctt |
100 |
Q |
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| T |
7737514 |
tagccaaaaaatacgccgtttatgtaccggacttaattttcttcggtggctcaactaccgataagtcggaccggtcactggcttttcaagccgagtgctt |
7737613 |
T |
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| Q |
101 |
ggctgtggggttaaagaaactcggggtgaagaaatgtgttgtggttggattcagttatggtggaatggtggcgtttaaaatggctgagatgtatagtgag |
200 |
Q |
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| T |
7737614 |
ggctgtggggttaaagaaactcggggtggagaaatgtgttgtggttggattcagttatggtggaatggtggcgtttaaaatggctgagatgtatagtgag |
7737713 |
T |
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| Q |
201 |
ttggttgaagccgtggtagtaagtggtgcagttttggctgtaaaagagtctatgattagtaaggcagttg |
270 |
Q |
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| T |
7737714 |
ttggttgaagccgtggtagtaagtggtgcagttttggctgtaaaagagtctatgattagtaaggcagttg |
7737783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 7748440 - 7748707
Alignment:
| Q |
1 |
tagccaaaaaatacgccgtttatgtaccggacttaattttcttcggtggctcaactaccgataagtcggaccggtcagtggcttttcaagccgagtgctt |
100 |
Q |
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| T |
7748440 |
tagctaaaaagtacgccgtttacgtgcccgacctaattttctttggcggctccacgaccgacaagcccaaccggtcaccgacttttcaagctgagtgttt |
7748539 |
T |
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| Q |
101 |
ggctgtggggttaaagaaactcggggtgaagaaatgtgttgtggttggattcagttatggtggaatggtggcgtttaaaatggctgagatgtatagtgag |
200 |
Q |
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| T |
7748540 |
ggttgtggggttaaagaaactcggggtggagaaatgtgttttggttggattcagttatggtggaatgattgcgtttaaaatggctgaactttacggtgag |
7748639 |
T |
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| Q |
201 |
ttggttgaagccgtggtagtaagtggtgcagttttggctgtaaaagagtctatgattagtaaggcagt |
268 |
Q |
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|| ||| |||| ||||| |||| ||| || ||||||||| || |||||||| ||||||||| |||||| |
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| T |
7748640 |
tttgttcaagctgtggttgtaactggcgccgttttggctatacaagagtctttgattagtagggcagt |
7748707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 6 - 266
Target Start/End: Original strand, 7768371 - 7768631
Alignment:
| Q |
6 |
aaaaaatacgccgtttatgtaccggacttaattttcttcggtggctcaactaccgataagtcggaccggtcagtggcttttcaagccgagtgcttggctg |
105 |
Q |
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||||| || |||||||| ||||| ||| |||||||||| || ||||| || || |||||| ||||||| ||| | |||||||||| ||||| ||||| |
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| T |
7768371 |
aaaaactatgccgtttacgtacctgacctaattttctttggcggctccacaactgataagccggaccgatcaccgacttttcaagcagagtgtttggcaa |
7768470 |
T |
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| Q |
106 |
tggggttaaagaaactcggggtgaagaaatgtgttgtggttggattcagttatggtggaatggtggcgtttaaaatggctgagatgtatagtgagttggt |
205 |
Q |
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||||||||||||||| |||||| ||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||| | |||||||| |||| |
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| T |
7768471 |
aggggttaaagaaacttggggtggagaaatgtgttttagttggatttagttatggtggaatggtggcgtttaaaatggctgagctttatagtgatctggt |
7768570 |
T |
|
| Q |
206 |
tgaagccgtggtagtaagtggtgcagttttggctgtaaaagagtctatgattagtaaggca |
266 |
Q |
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| ||| ||||| |||| ||| | ||||||||| || |||||||| ||||||||| |||| |
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| T |
7768571 |
tcaaggtgtggttgtaactggctctgttttggctatacaagagtctttgattagtagggca |
7768631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 211
Target Start/End: Complemental strand, 32942998 - 32942919
Alignment:
| Q |
132 |
aaatgtgttgtggttggattcagttatggtggaatggtggcgtttaaaatggctgagatgtatagtgagttggttgaagc |
211 |
Q |
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|||||| |||| ||||| || || || |||||||||||||| ||||||||||||||||||||| ||| |||||| |||| |
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| T |
32942998 |
aaatgtattgttgttggttttagctacggtggaatggtggcttttaaaatggctgagatgtatcctgatttggttcaagc |
32942919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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