View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17703_high_1 (Length: 472)
Name: NF17703_high_1
Description: NF17703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17703_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 3 - 464
Target Start/End: Original strand, 4633242 - 4633704
Alignment:
| Q |
3 |
gaattacctcctaagcaattcatatttaaccatatagttagaacaacagagcggcaaaatgtagctcaactgaccaagaacttaacaacccttctaaata |
102 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4633242 |
gaatcacctcctaagcaattcatatttaaccatatagatagaacaacagagcggcaaaatgtagctccactgaccaagaacttaacaacccttctaaata |
4633341 |
T |
|
| Q |
103 |
tgcacaaaggaagaaaaaatcaaatctgatatcatgataagtgtagttcatccaaataaattgtgcatttgaacaaaacatgactgtgagtggtttcaat |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4633342 |
tgcacaaaggaagaaaaaatcaaatctgatatcatgataagcgtagttcatccaaataaattgtgcatttgaacaaaacatgactgtgagtggtttcaat |
4633441 |
T |
|
| Q |
203 |
agtgtatttcacatcaatggtgaaggttgtt-aaaagttactatctagtaaagatcaaatgtgaaccgattgatcttaaatctccaatatcaatcaatgt |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4633442 |
agtgtatttcacatcaatggtgaaggttgtttaaaagttactatctagtaaagatcaaatgtgaaccgattgatcttaaatctccaatatcaatcaatgt |
4633541 |
T |
|
| Q |
302 |
ccatatatttaaggatctaaaaatagtaatcaacccaaacaattataacaattaaattaactatgcaatgaaaattaaggatattttagtgaaattttag |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4633542 |
ccatatatttaaggatctaaaaatagtaatcaacccaaacaattataacaattaaattaactatgcaatgaaaattaaggatattttagtgaaattttag |
4633641 |
T |
|
| Q |
402 |
gaaaactcacatcataagcctcattgatcaagtgaaactgcgccccacaatctcttcctttgc |
464 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4633642 |
gaaaactcacatcataagcttcattgatcaagtgaaactgcgccccacaatctcttcctttgc |
4633704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 261 - 464
Target Start/End: Original strand, 1080711 - 1080904
Alignment:
| Q |
261 |
tgtgaaccgattgatcttaaatctccaatatcaatcaatgtccatatatttaaggatctaaaaatagtaatcaacccaaacaattataacaattaaatta |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1080711 |
tgtgaaccgattgatcttaaatctccaatatc----------catatattaaaggatctaaaaatagtaatcaacccaaacaattataacaattaaatta |
1080800 |
T |
|
| Q |
361 |
actatgcaatgaaaattaaggatattttagtgaaattttaggaaaactcacatcataagcctcattgatcaagtgaaactgcgccccacaatctcttcct |
460 |
Q |
| |
|
|||||||||| ||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1080801 |
actatgcaataaaaattaaggatagttaagagaaattttaggaaaactcacatcataagcctcattgatcaagtgaaactgcaccccacaatctcttcct |
1080900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 50807888 - 50807974
Alignment:
| Q |
116 |
aaaaaatcaaatctgatatcatgata-agtgtagttcatccaaataaattgtgcatttgaacaaaacatgactgtgagtggtttcaa |
201 |
Q |
| |
|
||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
50807888 |
aaaaattcaaatctgatatcatgatatagcgtagttcatccaaataaattgtgcatttgaacaaaatatgattgtgagtggtttcaa |
50807974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 50867990 - 50867904
Alignment:
| Q |
116 |
aaaaaatcaaatctgatatcatgata-agtgtagttcatccaaataaattgtgcatttgaacaaaacatgactgtgagtggtttcaa |
201 |
Q |
| |
|
||||| |||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
50867990 |
aaaaattcaaatctgatatcatgatatagcgtagttcatacaaataaattgtgcatttgaacaaaatatgattgtgagtggtttcaa |
50867904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 50807626 - 50807663
Alignment:
| Q |
92 |
ccttctaaatatgcacaaaggaagaaaaaatcaaatct |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50807626 |
ccttctaaatatgcacaaaggaagaaaaaatcaaatct |
50807663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 50868251 - 50868214
Alignment:
| Q |
92 |
ccttctaaatatgcacaaaggaagaaaaaatcaaatct |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50868251 |
ccttctaaatatgcacaaaggaagaaaaaatcaaatct |
50868214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 19055544 - 19055458
Alignment:
| Q |
116 |
aaaaaatcaaatctgatatcatgata-agtgtagttcatccaaataaattgtgcatttgaacaaaacatgactgtgagtggtttcaa |
201 |
Q |
| |
|
||||| |||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
19055544 |
aaaaattcaaatctgatatcatgatatagcgtagttcatacaaataaattgtgcatttgaacaaaatatgattgtgagtggtttcaa |
19055458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 129
Target Start/End: Complemental strand, 19055807 - 19055770
Alignment:
| Q |
92 |
ccttctaaatatgcacaaaggaagaaaaaatcaaatct |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19055807 |
ccttctaaatatgcacaaaggaagaaaaaatcaaatct |
19055770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University