View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17703_high_2 (Length: 430)
Name: NF17703_high_2
Description: NF17703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17703_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 14 - 416
Target Start/End: Complemental strand, 51805701 - 51805299
Alignment:
| Q |
14 |
ataacaacactcattgatcttgaattaagtggaaatttcctcacaggtcaaattccaaaagaacttggattgttgaaaaacttgcaacagcttgaacttt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805701 |
ataacaacactcattgatcttgaattaagtggaaatttcctcacaggtcaaattccaaaagaacttggattgttgaaaaacttgcaacagcttgaacttt |
51805602 |
T |
|
| Q |
114 |
actataactacttccttgttggcagcatccctgaagagcttggaaatttaacagaacttgtcgatttagatatgtcggtaaacaaattaactggaacaat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51805601 |
actataactacttccttgttggcagcatccctgaagagcttggaaatttaacagaacttgtcgatttagatatgtcggtaaacaagttaactggaacaat |
51805502 |
T |
|
| Q |
214 |
cccttcttctgtttgtaaacttccaaagcttcaggttctccaattctacaataacagtctcacaggtgaaattccaaaatcaattgaaaactcaaaaaca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805501 |
cccttcttctgtttgtaaacttccaaagcttcaggttctccaattctacaataacagtctcacaggtgaaattccaaaatcaattgaaaactcaaaaaca |
51805402 |
T |
|
| Q |
314 |
cttagaatattgtcactttacgacaatttcttaagtggacacgttcctgcgaaactaggacaatcctccggaatggttgttcttgatttgtccgaaaaca |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805401 |
cttagaatattgtcactttacgacaatttcttaagtggacacgttcctgcgaaactaggacaatcctccggaatggttgttcttgatttgtccgaaaaca |
51805302 |
T |
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| Q |
414 |
agt |
416 |
Q |
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||| |
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| T |
51805301 |
agt |
51805299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 20017363 - 20017470
Alignment:
| Q |
14 |
ataacaacactcattgatcttgaattaagtggaaatttcctcacaggtcaaattccaaaagaacttggattgttgaaaaacttgcaacagcttgaacttt |
113 |
Q |
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|||||||| |||||||||||||| ||||||| ||||||||| || |||||||||| ||| |||||||||||||||||||||||||||||||||| || |
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| T |
20017363 |
ataacaaccctcattgatcttgagctaagtgggaatttcctcgcaagtcaaattccttcagagcttggattgttgaaaaacttgcaacagcttgaacatt |
20017462 |
T |
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| Q |
114 |
actataac |
121 |
Q |
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||||||| |
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| T |
20017463 |
gctataac |
20017470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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