View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17703_high_4 (Length: 272)
Name: NF17703_high_4
Description: NF17703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17703_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 2883568 - 2883807
Alignment:
| Q |
14 |
gtgagaagaagcaattatcaacatttattgcaacaaaacaagttaatgaaattaattctaaggcaataaatattaacacattctattgactttggatata |
113 |
Q |
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| T |
2883568 |
gtgagaagaagcaattatcaacatttattgcaacaaaacaagttaatgaaattaattctaaggcaataaatattaacacattctattgactttggatata |
2883667 |
T |
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| Q |
114 |
caggcaatggcaactggaggccaacaggaaagtgtagcaactgattatgtactaaaggtattgccaaattgagattctctcattctttaaaagttttgta |
213 |
Q |
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| T |
2883668 |
caggcaatggcaactggaggccaacaggaaagtgtagcaactgattatgtactaaaggtattgccaaattgagattttctcattctttaaaagttttgta |
2883767 |
T |
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| Q |
214 |
agattatttatgcaatacagtcacaaggtatttagagtct |
253 |
Q |
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| T |
2883768 |
agattatttatgcaatacagtcacaaggtatttagagtct |
2883807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 251
Target Start/End: Complemental strand, 2901271 - 2901137
Alignment:
| Q |
123 |
gcaactggaggccaacaggaaagtgtagcaactgattatgtactaaaggtatt------gccaaattgagattctctcattctttaaaagttttgtaaga |
216 |
Q |
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| T |
2901271 |
gcaactggaggccaacaggaaagtgtggtaacagactatgtactaaaggtattagcacagccaaaacgagactctcttattctttacaagttctttaaga |
2901172 |
T |
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| Q |
217 |
ttatttatgcaatacagtcacaaggtatttagagt |
251 |
Q |
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| T |
2901171 |
ttgtctatgaagtaaagtcacaaggtatttagagt |
2901137 |
T |
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