View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17703_high_5 (Length: 269)
Name: NF17703_high_5
Description: NF17703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17703_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 12 - 254
Target Start/End: Original strand, 37062133 - 37062377
Alignment:
| Q |
12 |
ataggcaaataatgtataatagaccaaataaataaccttgacattatttatatatggtaaatattgatatgcatttctaccac--taggcgacttctgat |
109 |
Q |
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| T |
37062133 |
ataggcaaataatgtataatagaccaaataaataaccttgacattatttatatatggtaaatattgatatgcatttctaccacactaggcgacttctgat |
37062232 |
T |
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| Q |
110 |
aattttgatgctttattcaaatttagaataaaaataaaaatgtctttattaatcatttgaataacattccttactgcaaggtcattaataattcattagc |
209 |
Q |
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| T |
37062233 |
aattttgatgctttattcaaatttagaataaaaataaaaatgtctttattaatcatttgaataacattccttactgcaaggtcattaataattcattagc |
37062332 |
T |
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| Q |
210 |
aaaagaaactaagaaatcagagcaataatattgaaactgctactt |
254 |
Q |
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| T |
37062333 |
aaaagaaacaaagaaatcagagcaataatattgaaactgctactt |
37062377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 37069486 - 37069525
Alignment:
| Q |
12 |
ataggcaaataatgtataatagaccaaataaataaccttg |
51 |
Q |
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|||||||||||||| |||||||||||||||||||| |||| |
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| T |
37069486 |
ataggcaaataatgcataatagaccaaataaataatcttg |
37069525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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