View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17703_low_1 (Length: 567)

Name: NF17703_low_1
Description: NF17703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17703_low_1
NF17703_low_1
[»] chr1 (12 HSPs)
chr1 (1-549)||(28542783-28543331)
chr1 (198-396)||(34910431-34910630)
chr1 (3-91)||(34910237-34910325)
chr1 (407-535)||(34910668-34910787)
chr1 (100-165)||(34910356-34910423)
chr1 (2-49)||(28545517-28545564)
chr1 (269-362)||(34905310-34905404)
chr1 (100-137)||(34905256-34905293)
chr1 (1-91)||(34896443-34896530)
chr1 (407-476)||(34905462-34905534)
chr1 (100-141)||(34896561-34896602)
chr1 (412-479)||(34896913-34896983)


Alignment Details
Target: chr1 (Bit Score: 525; Significance: 0; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 1 - 549
Target Start/End: Complemental strand, 28543331 - 28542783
Alignment:
Q  1 attaccattattagatattaacaaaagaaagatgacataaactagctaacacatatcttagccgttatgtaatctttaggtctttaaaaaggattgtaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28543331 attaccattattagatattaacaaaagaaagatgacataaactagctaacacatatcttagtcgttatgtaatctttaggtctttaaaaaggattgtaga 28543232  T
Q  101 tatagctgaaagaaatcacattccttcatagtgttcttgttgttccccatgatatcgatatacttacatgtacgtgaaaacaatttacaagggtgactgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  28543231 tatagctgaaagaaatcacattccttcatagtgttcttgttgttccccatgatatcgatatacttacatgtacgtgaaaacaatttacaaggtggactgt 28543132  T
Q  201 ggaggtggcggaaaggcggaacaaatcgataaacaggatttagcacacatacacacacccattaattaacatgaaaacttcattaaagaagaaataaaat 300  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28543131 ggaggtgggggaaaggcggaacaaatcgataaacaggatttagcacacatacacacacccattaattcacatgaaaacttcattaaagaagaaataaaat 28543032  T
Q  301 acaataatagtaaattcaaagtaaccaaagctagacaatttgtttgcaaatccttcataaaaacaaaatcttcctaaaagcattagctaagtactaaaaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28543031 acaataatagtaaattcaaagtaaccaaagctagacaatttgtttgcaaatccttcataaaaacaaaatcttcctaaaagcattagctaagtactaaaaa 28542932  T
Q  401 atatgataaactattgtgcttctcacaaatcacctggcactaccaataaactggtttcaaaggcttccatgaagacagtttaccaagagcaagacaatta 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28542931 atatgataaactattgtgcttctcacaaatcacctggcactaccaataaactggtttcaaaggcttccatgaagacagtttgccaagagcaagacaatta 28542832  T
Q  501 ataaaatgggaaaatatcaaaatttccaatagaaaacctaccacctaat 549  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28542831 ataaaatgggaaaatatcaaaatttccaatagaaaacctaccacctaat 28542783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 198 - 396
Target Start/End: Original strand, 34910431 - 34910630
Alignment:
Q  198 tgtggaggtggcggaaaggcggaacaaatcgataaacaggatttagcacacatacacacacccattaattaacatgaaaacttcattaaagaagaaataa 297  Q
    ||||||||||| |||| ||||||||||||| |||||||||||  |||||||| |||||||| |||||||| |||||||| ||||||||||||||||| ||    
T  34910431 tgtggaggtgggggaagggcggaacaaatccataaacaggatgcagcacacacacacacacacattaattcacatgaaatcttcattaaagaagaaagaa 34910530  T
Q  298 aatacaataatagtaaattcaaagtaaccaaagctaga-caatttgtttgcaaatccttcataaaaacaaaatcttcctaaaagcattagctaagtacta 396  Q
    ||||||||||||||| ||||| ||||| |||||||||| || || ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  34910531 aatacaataatagtacattcagagtaagcaaagctagaccagttggtttgcaaatccttcgtaaaaacaaaatcttcctaaaagcattagctaagcacta 34910630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 34910237 - 34910325
Alignment:
Q  3 taccattattagatattaacaaaagaaagatgacataaactagctaacacatatcttagccgttatgtaatctttaggtctttaaaaag 91  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||| ||| ||||||| |||||||||||||||||||||||| ||||    
T  34910237 taccattattagatattaataaaagaaagatggcataaactagctaatacaaatcttagtcgttatgtaatctttaggtctttacaaag 34910325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 407 - 535
Target Start/End: Original strand, 34910668 - 34910787
Alignment:
Q  407 taaactattgtgcttctcacaaatcacctggcactaccaataaactggtttcaaaggcttccatgaagacagtttaccaagagcaagacaattaataaaa 506  Q
    |||| |||||||||||||||| ||||| |||  |||||||||||||||||||||||         |||||| ||||| |||||||||| |||||||||||    
T  34910668 taaaatattgtgcttctcacacatcacatggtgctaccaataaactggtttcaaag---------aagacaatttactaagagcaagaaaattaataaaa 34910758  T
Q  507 tgggaaaatatcaaaatttccaatagaaa 535  Q
    ||| |||||||||||||||||||||||||    
T  34910759 tggaaaaatatcaaaatttccaatagaaa 34910787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 100 - 165
Target Start/End: Original strand, 34910356 - 34910423
Alignment:
Q  100 atatagctgaaagaaatcacattccttcatagtgttcttgttgt--tccccatgatatcgatatactt 165  Q
    ||||| ||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||    
T  34910356 atataactgaaagaaatcacattccttcatagtgttcttgttgtcgttcccatgatatcgatatactt 34910423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 49
Target Start/End: Complemental strand, 28545564 - 28545517
Alignment:
Q  2 ttaccattattagatattaacaaaagaaagatgacataaactagctaa 49  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||    
T  28545564 ttaccattattagctattaataaaagaaagatgacataaactagctaa 28545517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 269 - 362
Target Start/End: Original strand, 34905310 - 34905404
Alignment:
Q  269 acatgaaaacttcattaaagaagaaataaaatacaataatagtaaattcaaagtaaccaaagctagacaatt-tgtttgcaaatccttcataaaa 362  Q
    |||||||| |||||||| |||||||| |||||||||||||| |||||||| | | | ||||||| |||| || | |||||| ||| |||||||||    
T  34905310 acatgaaatcttcattagagaagaaagaaaatacaataataataaattcagatttagcaaagcttgacagttatttttgcatatcattcataaaa 34905404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 137
Target Start/End: Original strand, 34905256 - 34905293
Alignment:
Q  100 atatagctgaaagaaatcacattccttcatagtgttct 137  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  34905256 atatagctgaaagaaatcacattccttcatactgttct 34905293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 34896443 - 34896530
Alignment:
Q  1 attaccattattagatattaacaaaagaaagatgacataaactagctaacacatatcttagccgttatgtaatctttaggtctttaaaaag 91  Q
    ||||||||||||||||| | |   ||||| || |||||||||||||||| ||| |||| ||  |||| |||||||||||||||| ||||||    
T  34896443 attaccattattagataatga---aagaaggacgacataaactagctaatacaaatctcagttgttacgtaatctttaggtcttcaaaaag 34896530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 476
Target Start/End: Original strand, 34905462 - 34905534
Alignment:
Q  407 taaactattgtgcttctcacaaatcacctggcactacc---aataaactggtttcaaaggcttccatgaagac 476  Q
    |||| |||||||||||||||| ||||| || |||||||   ||||||||||||||||| ||| | ||||||||    
T  34905462 taaaatattgtgcttctcacacatcacatgacactaccaataataaactggtttcaaaagctccgatgaagac 34905534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 34896561 - 34896602
Alignment:
Q  100 atatagctgaaagaaatcacattccttcatagtgttcttgtt 141  Q
    |||||||||||||||||||||||| ||| || ||||||||||    
T  34896561 atatagctgaaagaaatcacattctttcgtactgttcttgtt 34896602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 412 - 479
Target Start/End: Original strand, 34896913 - 34896983
Alignment:
Q  412 tattgtgcttctcacaaatcacctggcactaccaa---taaactggtttcaaaggcttccatgaagacagt 479  Q
    |||||||||||||||| ||||| || || ||||||   ||||||||||||||| ||| | |||||||||||    
T  34896913 tattgtgcttctcacacatcacatgacattaccaacaataaactggtttcaaaagctccaatgaagacagt 34896983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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