View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17703_low_10 (Length: 240)

Name: NF17703_low_10
Description: NF17703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17703_low_10
NF17703_low_10
[»] chr1 (9 HSPs)
chr1 (60-240)||(8016214-8016397)
chr1 (122-179)||(46252676-46252733)
chr1 (120-157)||(1565551-1565588)
chr1 (142-179)||(3223706-3223743)
chr1 (124-177)||(5886990-5887043)
chr1 (40-69)||(8016160-8016189)
chr1 (122-179)||(10809364-10809421)
chr1 (111-168)||(38503470-38503527)
chr1 (140-176)||(29635384-29635420)
[»] chr6 (3 HSPs)
chr6 (122-179)||(3528822-3528879)
chr6 (130-179)||(281842-281891)
chr6 (142-183)||(6536986-6537027)
[»] chr7 (1 HSPs)
chr7 (123-179)||(25670580-25670636)
[»] chr5 (1 HSPs)
chr5 (122-176)||(11707074-11707128)
[»] chr2 (4 HSPs)
chr2 (122-168)||(35379021-35379067)
chr2 (122-176)||(44443340-44443394)
chr2 (122-179)||(43199778-43199835)
chr2 (122-182)||(43910990-43911050)
[»] chr8 (1 HSPs)
chr8 (122-179)||(7714261-7714318)
[»] chr3 (1 HSPs)
chr3 (122-174)||(41633379-41633431)


Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 60 - 240
Target Start/End: Original strand, 8016214 - 8016397
Alignment:
Q  60 aagccatttttctataacaaaaaataaaatggagttattgttttcatatgagtttctgttatctatcttggagagctcaggaaaataagctgaaaacaag 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  8016214 aagccatttttctataacaaaaaataaaatggagttattgttttcatatgagtttctgttatctatcttggagagcttaggaaaataagctgaaaacaag 8016313  T
Q  160 ttataaacatttcataagttctcctggccagtctcataaatattcgagacaat---tgataagctcaaataagtcaatcaaaac 240  Q
    |||| ||||| ||||||||||||| || ||||||||||||||||| |||||||   |||||| |||||||||||||||||||||    
T  8016314 ttatgaacatgtcataagttctcccggacagtctcataaatattcaagacaattgatgataatctcaaataagtcaatcaaaac 8016397  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 46252733 - 46252676
Alignment:
Q  122 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagtt 179  Q
    ||||||||||||||| | |||||||| |||||||||| |||| ||||| |||||||||    
T  46252733 ctatcttggagagcttatgaaaataacctgaaaacaacttatgaacatgtcataagtt 46252676  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 1565588 - 1565551
Alignment:
Q  120 atctatcttggagagctcaggaaaataagctgaaaaca 157  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  1565588 atctattttggagagctcatgaaaataagctgaaaaca 1565551  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 3223706 - 3223743
Alignment:
Q  142 aaataagctgaaaacaagttataaacatttcataagtt 179  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  3223706 aaataagctgaaaacaacttataaacatgtcataagtt 3223743  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 5887043 - 5886990
Alignment:
Q  124 atcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataag 177  Q
    |||||||||| || | ||||||||||||||||||| |||| ||||| |||||||    
T  5887043 atcttggagaacttacgaaaataagctgaaaacaacttatgaacatgtcataag 5886990  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 69
Target Start/End: Original strand, 8016160 - 8016189
Alignment:
Q  40 catcaaagctttaacatgcaaagccatttt 69  Q
    ||||||||||||||||||||||||||||||    
T  8016160 catcaaagctttaacatgcaaagccatttt 8016189  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 10809364 - 10809421
Alignment:
Q  122 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagtt 179  Q
    |||| ||||||| || | ||||||||||||||||||  |||||||||| |||||||||    
T  10809364 ctatattggagaacttatgaaaataagctgaaaacatattataaacatgtcataagtt 10809421  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 38503527 - 38503470
Alignment:
Q  111 gtttctgttatctatcttggagagctcaggaaaataagctgaaaacaagttataaaca 168  Q
    |||| ||||| |||||||||||| || | ||||||||||||||||||| |||| ||||    
T  38503527 gtttttgttagctatcttggagaacttatgaaaataagctgaaaacaacttatgaaca 38503470  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 176
Target Start/End: Original strand, 29635384 - 29635420
Alignment:
Q  140 gaaaataagctgaaaacaagttataaacatttcataa 176  Q
    ||||||||||||||||||| |||||||||| ||||||    
T  29635384 gaaaataagctgaaaacaacttataaacatgtcataa 29635420  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 3528822 - 3528879
Alignment:
Q  122 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagtt 179  Q
    ||||||||||||||| | ||||||||| ||||||||||||||  |||| |||||||||    
T  3528822 ctatcttggagagcttatgaaaataagatgaaaacaagttatggacatgtcataagtt 3528879  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 281891 - 281842
Alignment:
Q  130 gagagctcaggaaaataagctgaaaacaagttataaacatttcataagtt 179  Q
    ||||||||| | ||||||||||||||||| ||||| |||| |||||||||    
T  281891 gagagctcatggaaataagctgaaaacaacttatagacatgtcataagtt 281842  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 6536986 - 6537027
Alignment:
Q  142 aaataagctgaaaacaagttataaacatttcataagttctcc 183  Q
    ||||||||||||||||| |||| ||||| |||||||||||||    
T  6536986 aaataagctgaaaacaacttatgaacatgtcataagttctcc 6537027  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 179
Target Start/End: Complemental strand, 25670636 - 25670580
Alignment:
Q  123 tatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagtt 179  Q
    ||||||||||||||   ||||||||||||||||||| |||| ||||| |||||||||    
T  25670636 tatcttggagagcttgtgaaaataagctgaaaacaatttattaacatgtcataagtt 25670580  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 11707074 - 11707128
Alignment:
Q  122 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataa 176  Q
    |||||||| ||||||   ||||||||||||||||||| |||||||||| ||||||    
T  11707074 ctatcttgtagagcttttgaaaataagctgaaaacaacttataaacatgtcataa 11707128  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 35379067 - 35379021
Alignment:
Q  122 ctatcttggagagctcaggaaaataagctgaaaacaagttataaaca 168  Q
    ||||||||||||||| | ||||||||||||||||||| |||| ||||    
T  35379067 ctatcttggagagcttatgaaaataagctgaaaacaacttatgaaca 35379021  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 44443340 - 44443394
Alignment:
Q  122 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataa 176  Q
    ||||||| ||||||  | ||||||||||||||||||| |||| ||||||||||||    
T  44443340 ctatctttgagagcatatgaaaataagctgaaaacaacttatgaacatttcataa 44443394  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 43199835 - 43199778
Alignment:
Q  122 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagtt 179  Q
    ||||||||||| ||| | |||| |||||||||||||| |||||||||| ||| |||||    
T  43199835 ctatcttggagggcttatgaaattaagctgaaaacaacttataaacatgtcacaagtt 43199778  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 43911050 - 43910990
Alignment:
Q  122 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagttctc 182  Q
    |||||||||| ||||   || |||||||||||||||| |||| ||||| ||||||||||||    
T  43911050 ctatcttggaaagcttgtgataataagctgaaaacaacttatgaacatgtcataagttctc 43910990  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 7714261 - 7714318
Alignment:
Q  122 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcataagtt 179  Q
    ||||||||||||||||| ||||||||| ||||||||  | ||  ||||||||||||||    
T  7714261 ctatcttggagagctcatgaaaataagttgaaaacagctcatcgacatttcataagtt 7714318  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 174
Target Start/End: Original strand, 41633379 - 41633431
Alignment:
Q  122 ctatcttggagagctcaggaaaataagctgaaaacaagttataaacatttcat 174  Q
    |||| |||||||||| | ||||||||||||||||||| ||||| |||| ||||    
T  41633379 ctattttggagagcttatgaaaataagctgaaaacaatttatagacatgtcat 41633431  T

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