View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17703_low_13 (Length: 206)
Name: NF17703_low_13
Description: NF17703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17703_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 31871515 - 31871355
Alignment:
| Q |
16 |
atgaatatggaaagagagagtcagcttttggggaaaaattcaatgaacccattttttcttctttttgaatatgcaagaaatccatttgaaattggtgaag |
115 |
Q |
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| T |
31871515 |
atgaatatggaaagagag--tcaacttttggggaaaattt-aatgaatccattttttcttctttttgaatatgcaagaaatccatttgaaatcggtgaag |
31871419 |
T |
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| Q |
116 |
attttccttnnnnnnnntaaaatctatgaagaagctacatgtatttggattattgaggtgtgact |
180 |
Q |
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| T |
31871418 |
attttcctt-aaaaaaataaaatctatgaagaagctacatgtatttggattattgaggtgtgact |
31871355 |
T |
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Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 14 - 178
Target Start/End: Complemental strand, 14855409 - 14855247
Alignment:
| Q |
14 |
agatgaatatggaaagagagagtcagcttttggggaaaaattcaatgaacccattttttcttctttttgaatatgcaagaaatccatttgaaattggtga |
113 |
Q |
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| T |
14855409 |
agatgaatatggaaagagagagtcagtttttggggaaaa-ttcaatgaacctattttttcttctttttgaatatgcaagaaatccatttgaaatcaatga |
14855311 |
T |
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| Q |
114 |
agattttccttnnnnnnnntaaaatctatgaagaagctacatgtatttggattattgaggtgtga |
178 |
Q |
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| T |
14855310 |
agatttttctt-aaaaatataaaatctatgaagaagctacatgtatttgaattattgaggtgtga |
14855247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 42640731 - 42640788
Alignment:
| Q |
133 |
taaaatctatgaagaagctacatgtatttggattattgaggtgtgactgttgattttg |
190 |
Q |
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| T |
42640731 |
taaaatctatgaagaagctacatgtatttggattattgaggtgtgactgttgattttg |
42640788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 81 - 124
Target Start/End: Original strand, 42639594 - 42639637
Alignment:
| Q |
81 |
tgaatatgcaagaaatccatttgaaattggtgaagattttcctt |
124 |
Q |
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| T |
42639594 |
tgaatatgtaagaaatccatttgaaattggtgaagattttcctt |
42639637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 13 - 103
Target Start/End: Original strand, 54848300 - 54848388
Alignment:
| Q |
13 |
gagatgaatatggaaagagagagtcagcttttggggaaaaattcaatgaacccattttttcttctttttgaatatgcaagaaatccatttg |
103 |
Q |
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| T |
54848300 |
gagatgaatatagagagagagagtcagtttttgggg-aaaattcaatgaacccattattt-ttctttttgaatatgcaaggaatccatttg |
54848388 |
T |
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