View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17703_low_6 (Length: 275)
Name: NF17703_low_6
Description: NF17703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17703_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 2685627 - 2685872
Alignment:
| Q |
20 |
catttgtgtcacataaaccataaggaccacattctctgtaactatcacattgatcttttggtgcataccaaaaatttgtccatgttttcatactttgtat |
119 |
Q |
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| T |
2685627 |
catttgtgtcgcataaaccataaggaccacattctctgtaactatcacattgatcttttggtgcataccaaaaatttgtccatgttttcatactttgtat |
2685726 |
T |
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| Q |
120 |
ccatgttcgacgttgaagttgaccacccgaatccacaactagtctagaaaaaatcgatggatttccgatggtaaacgagtagttaacaccgtgttggttt |
219 |
Q |
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| T |
2685727 |
ccatgttcgacgttgaagttgaccacccgaatccacaactagtctagaaaaaatcgatggatttccgatggtaaacgagtagttaacaccgtgttggttt |
2685826 |
T |
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| Q |
220 |
gatgaaaaattgaaaactattgaatctgtatcatgttgcatctctg |
265 |
Q |
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| T |
2685827 |
gatgaaaaattgaaaactattgaatctgtatcatgttgcatctctg |
2685872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 36361448 - 36361365
Alignment:
| Q |
18 |
agcatttgtgtcacataaaccataaggaccacattctctgtaactatcacattgatcttttggtgcataccaaaaatttgtcca |
101 |
Q |
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| T |
36361448 |
agcatttgtgtcacacacaccaaatggaccacactctttgtaattatcacattggtcttttggtgcataccaaaattttgtcca |
36361365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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