View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17703_low_9 (Length: 269)
Name: NF17703_low_9
Description: NF17703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17703_low_9 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 86 - 269
Target Start/End: Original strand, 18961326 - 18961509
Alignment:
| Q |
86 |
atatatatattacacttacttctgtaggtccagaagtggatagattggcagcaatggcaggaaagtataaaatacatttagtgatgggtgtgatagagag |
185 |
Q |
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| T |
18961326 |
atatatatattacacttacttctgtaggtccagaagtggatagattggcagcaatggcaggaaagtataaaatacatttagtgatgggtgtgatagagag |
18961425 |
T |
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| Q |
186 |
gaatggctacacactttactgtactgttctattctttgattctcaaggtcattacctaggaaagcataggaaactcatgccaac |
269 |
Q |
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| T |
18961426 |
gaatggctacacactttactgtactgttctattctttgattctcaaggtcattacctaggaaagcattggaaactcatgccaac |
18961509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 108 - 269
Target Start/End: Original strand, 18966990 - 18967151
Alignment:
| Q |
108 |
tgtaggtccagaagtggatagattggcagcaatggcaggaaagtataaaatacatttagtgatgggtgtgatagagaggaatggctacacactttactgt |
207 |
Q |
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| T |
18966990 |
tgtaggtcctgaggtggatagattggcagtaatggcaggaaagtataaagtacatctagtgatgggtgtgatagagagggatggctacacactttactgc |
18967089 |
T |
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| Q |
208 |
actgttctattctttgattctcaaggtcattacctaggaaagcataggaaactcatgccaac |
269 |
Q |
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| T |
18967090 |
accgttctcttctttgattctcaaggtcattacctaggaaagcacaggaaaatcatgccaac |
18967151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 18961186 - 18961269
Alignment:
| Q |
22 |
gaaaatacactaaaatcatcataaatttccctccataaagtcactca----------ctcttttcactaacaaaatatatatat |
95 |
Q |
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| T |
18961186 |
gaaaatacactaaaatcatcataaatttccctccataaaatcactcaatgcaactctctcttttcactaacaaaatatatatat |
18961269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 45929870 - 45929915
Alignment:
| Q |
23 |
aaaatacactaaaatcatcataaatttccctccataaagtcactca |
68 |
Q |
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| T |
45929870 |
aaaatacactcaagtcaccataactttccctccataaagtcactca |
45929915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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