View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17704_high_11 (Length: 366)
Name: NF17704_high_11
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17704_high_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 22 - 350
Target Start/End: Original strand, 502086 - 502420
Alignment:
| Q |
22 |
tcagtttcagatcacatgaatggatttcaatatcaaaccgagaaattcgatagctatgtgattgacatggatcccgccttctcttcaggcatcaacaaag |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
502086 |
tcagtttcagatcacatgaatggatttcaatatccaaccgagaaattcgatagctatgtgattgacatggatgccgccttctcttcaggcatcaacaaag |
502185 |
T |
|
| Q |
122 |
atagtagtgccaatgctaatcctagaattacggtgtgactctcttttttcttctttaatatttcactacaagactttaattaatattccacatttgggct |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
502186 |
atagtagtgccaatgctaatcctagaattacggtgtgactctcttttttcttctttaatatttcactactagac-ttaattaatattccacatttgggct |
502284 |
T |
|
| Q |
222 |
aagaactttttatcttcagaatcctaaaaccacaattagcactaatgaggagtctataaaaatttaagt---ttataatccgtatgaaacctcctacatt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
502285 |
aagaactttttatcttcagaatcctaaaaccacaattagcactaatgatgagtctataaaaatttaagtttattataatcggtatgaaacctcctacatt |
502384 |
T |
|
| Q |
319 |
----tacatggtttaatgtgatatcacatcaatttg |
350 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |
|
|
| T |
502385 |
tacatacatggtttaatgtgatatgacatcaatttg |
502420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University