View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17704_high_15 (Length: 322)
Name: NF17704_high_15
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17704_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 309
Target Start/End: Complemental strand, 31924705 - 31924412
Alignment:
| Q |
16 |
acttacttggtttcagctggtatttgaggaagaattttcctaacacagaactccaggtaccctgatgctttgagtaacaaatcaattgcttccctcttgc |
115 |
Q |
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| T |
31924705 |
acttacttggtttcagctggtatttgaggaagaattttcctaacacagaactccaggtaccctgatgctttgagtaacaaatcaattgcttccctcttgc |
31924606 |
T |
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| Q |
116 |
tatctgatagtacaaaaatgtttaaccatgattattgactgttcatattgtggatccttcaataggatccgattctatgtaacaccgcacttcacattga |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31924605 |
tatctgatagtacaaaaatgtttaaccatgattattgactgttcatattgtggatccttcaataggatccgattctatgtaacaccgcacttcacattga |
31924506 |
T |
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| Q |
216 |
aagcgataaacagtgatccgattctatgacacatgtgattatattcaattgttctattttcttaaattatcatcggtgtcaacgtgtcaatttc |
309 |
Q |
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| T |
31924505 |
aagctataaacagtgatccgattctatgacacatgtgattatattcaattgttctattttcttaaattattatcggtgtcaacgtgtcaatttc |
31924412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 303
Target Start/End: Original strand, 26462652 - 26462712
Alignment:
| Q |
243 |
gacacatgtgattatattcaattgttctattttcttaaattatcatcggtgtcaacgtgtc |
303 |
Q |
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| T |
26462652 |
gacacatgtgattacattcaattatttcattttcttaaattattatcagtgtcgacgtgtc |
26462712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 16808956 - 16809018
Alignment:
| Q |
242 |
tgacacatgtgattatattcaattgttctattttcttaaattatcatcggtgtcaacgtgtca |
304 |
Q |
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| T |
16808956 |
tgacacgtatgattatatttaattattctattttcttaaattattaccggtgtcgatgtgtca |
16809018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 27424770 - 27424811
Alignment:
| Q |
244 |
acacatgtgattatattcaattgttctattttcttaaattat |
285 |
Q |
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| T |
27424770 |
acacatgttattatattcaatcattctattttcttaaattat |
27424811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 4323900 - 4323937
Alignment:
| Q |
267 |
ttctattttcttaaattatcatcggtgtcaacgtgtca |
304 |
Q |
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| T |
4323900 |
ttctattttcttaaattattatcgttgtcaacgtgtca |
4323937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 277
Target Start/End: Original strand, 10038452 - 10038485
Alignment:
| Q |
244 |
acacatgtgattatattcaattgttctattttct |
277 |
Q |
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|||||||||||||||||||||| ||||||||||| |
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| T |
10038452 |
acacatgtgattatattcaattattctattttct |
10038485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 27777251 - 27777287
Alignment:
| Q |
244 |
acacatgtgattatattcaattgttctattttcttaa |
280 |
Q |
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||||||||||||||||||||||||| |||||| |||| |
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| T |
27777251 |
acacatgtgattatattcaattgttttattttgttaa |
27777287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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