View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17704_high_18 (Length: 278)
Name: NF17704_high_18
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17704_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 681118 - 681381
Alignment:
| Q |
1 |
tatcatattatcacatattcatttgtttcttatnnnnnnntttcgtaaaagtttacagatcatagctcaactgataaatattaaaattatttgagtgaaa |
100 |
Q |
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| T |
681118 |
tatcatattatcacatattcatttgtttcttataaaattctttcgtaaaagtttacagatcatagctcaactgataaatattaaaattatttgagtgaaa |
681217 |
T |
|
| Q |
101 |
tctctcacttgtatgatttttcaaatgattattaccat-ccgtctatttaaaagaaaaataaaagaattttttcctt---nnnnnnnnnnnnnngtatta |
196 |
Q |
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| T |
681218 |
tctctcacttatatgatttttcaagtgattattatcatcccgtctatttacaagaaaaataaaagaa-tttttccttaaaaaaaaaaaaaaaaagcatta |
681316 |
T |
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| Q |
197 |
tttcatacacgagagttaatgatcgaacctctaatcacttagagcatttgagtgccatatacttg |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
681317 |
tttcatacacgagagttaatgatcgaacctctaatcacttagagcatttgagtgccatatacttg |
681381 |
T |
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