View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17704_high_19 (Length: 263)
Name: NF17704_high_19
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17704_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 3616135 - 3615944
Alignment:
| Q |
19 |
ctcttatcactcactgtcgccgtttcctttctgcttcttcccttccttctctctgtcgagcacagaatcatcaatagcatcctctttcatcgtcctttat |
118 |
Q |
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| T |
3616135 |
ctcttatcactcactgtcgccgtttcctttctgcttcttcccttccttctctctgtcgagcacagaatcatcaatagcatcctctttcatcgtcctttat |
3616036 |
T |
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| Q |
119 |
ttaatttacaagggtcatataatgtttaaaatccatcgtcccttatatgtattttcatcatcctttatttttccctgttggagttctaagaa |
210 |
Q |
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|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3616035 |
ttaatttagaagggtcatataatgtttaaaatccattgtcccttatatgtattttcatcatcctttatttttccctgttggagttctaagaa |
3615944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 52077420 - 52077229
Alignment:
| Q |
19 |
ctcttatcactcactgtcgccgtttcctttctgcttcttcccttccttctctctgtcgagcacagaatcatcaatagcatcctctttcatcgtcctttat |
118 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52077420 |
ctcttatcactcactatcgtcgtttcctttctgcttcttcccttccttctctctgtcgagcacagaatcatcaatagcgtcctctttcatcgtcctttat |
52077321 |
T |
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| Q |
119 |
ttaatttacaagggtcatataatgtttaaaatccatcgtcccttatatgtattttcatcatcctttatttttccctgttggagttctaagaa |
210 |
Q |
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||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52077320 |
ttaatttacaagggtcatataataattaaaatcaattgtcccttatatgtattttcatcatcctttatttttccctgttggagttctaagaa |
52077229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 16756718 - 16756909
Alignment:
| Q |
19 |
ctcttatcactcactgtcgccgtttcctttctgcttcttcccttccttctctctgtcgagcacagaatcatcaatagcatcctctttcatcgtcctttat |
118 |
Q |
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||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
16756718 |
ctcttatcactcactatcgttgtttccttcctgcttcttcccttccttctctctgtcgagcacaaaatcatcaataacatcctctttcatcgtcctttat |
16756817 |
T |
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| Q |
119 |
ttaatttacaagggtcatataatgtttaaaatccatcgtcccttatatgtattttcatcatcctttatttttccctgttggagttctaagaa |
210 |
Q |
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| T |
16756818 |
ttaatttacaagggtcatataatgtttaaaatccattgtcccttatatgtattttcatcatcctttatttttccctgttggagttctaagaa |
16756909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 7309513 - 7309553
Alignment:
| Q |
38 |
ccgtttcctttctgcttcttcccttccttctctctgtcgag |
78 |
Q |
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| T |
7309513 |
ccgtttcctttcagcttcttcttttccttctctctgtcgag |
7309553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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