View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17704_high_2 (Length: 678)

Name: NF17704_high_2
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17704_high_2
NF17704_high_2
[»] chr2 (3 HSPs)
chr2 (18-663)||(7240498-7241143)
chr2 (507-540)||(9556247-9556280)
chr2 (507-540)||(10884550-10884583)
[»] chr4 (2 HSPs)
chr4 (49-367)||(48732809-48733130)
chr4 (494-539)||(1706618-1706663)
[»] chr6 (2 HSPs)
chr6 (495-539)||(20370880-20370924)
chr6 (499-539)||(20351149-20351189)
[»] chr8 (6 HSPs)
chr8 (488-539)||(1433538-1433589)
chr8 (500-539)||(27028833-27028872)
chr8 (500-541)||(25097388-25097429)
chr8 (507-540)||(26473781-26473814)
chr8 (507-539)||(10075580-10075612)
chr8 (500-540)||(25097394-25097434)
[»] chr7 (3 HSPs)
chr7 (493-535)||(27548258-27548300)
chr7 (502-539)||(529379-529416)
chr7 (499-539)||(48917375-48917415)
[»] chr3 (2 HSPs)
chr3 (491-537)||(25964436-25964482)
chr3 (507-539)||(16790407-16790439)
[»] chr1 (1 HSPs)
chr1 (507-540)||(25479589-25479622)


Alignment Details
Target: chr2 (Bit Score: 626; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 18 - 663
Target Start/End: Complemental strand, 7241143 - 7240498
Alignment:
Q  18 attttaagacatggtgagaaacaccccttgttacagaaactgagcatagaaattttaacaagtcttgcattggaagatgaggcatcagaaaggattggag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7241143 attttaagacatggtgagaaacaccccttgttacagaaactgagcatagaaattttaacaagtcttgcattggaagatgaggcatcagaaaggattggag 7241044  T
Q  118 gtacaggtggagtgcttaaagaattgttcaacatatttttcagacaaaacattcctgaaaaccagaaagatgtaacaactgttgctggtgaggccttatc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7241043 gtacaggtggagtgcttaaagaattgttcaacatatttttcagacaaaacattcctgaaaaccagaaagatgtaacaactgttgctggtgaggccttatc 7240944  T
Q  218 aatgctggcattagaaagcaagagcaactgtcatcggattttgaagttgagagtgctcgaaaggcttattgaagcattgaaagtaccgctgattcgtgtc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7240943 aatgctggcattagaaagcaagagcaactgtcatcggattttgaagttgagagtgctcgaaaggcttattgaagcattgaaagtaccactgattcgtgtc 7240844  T
Q  318 agtgccgctagaattctaagaaatttatgcaactacagtggatcagaatgcttcaaccagttaaagggagttacagcagcagctccaacagtaagtgtta 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7240843 agtgccgctagaattctaagaaatttatgcaactacagtggatcagaatgcttcaaccagttaaagggagttacagcagcagctccaacagtaagtgtta 7240744  T
Q  418 ttttcaatttttattaattaaacaattacaagttttatcaaccaagttcaagcatgtgagattcgtaaagttatgtaagctttaagctgttttcataagc 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7240743 ttttcaatttttattaattaaacaattacaagttttatcaaccaagtccaagcatgtgagattcgtaaagttatgtaagctttaagctgttttcataagc 7240644  T
Q  518 tatctaggatagcttatgaaaactctatgaaaatggcctatggacattttagaagctcttcacaatttcataggctctatcaaatggtctttcaagagct 617  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7240643 tatctaggatagcttatgaaaactatctgaaaatggcctatggacattttagaagctcttcacaatttcataggctctatcaaatggtctttcaagagct 7240544  T
Q  618 tatgtccataaatatgctaaaataagtcgattcaaatagaccctat 663  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  7240543 tatgtccatagatatgctaaaataagtcgattcaaatagaccctat 7240498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 9556280 - 9556247
Alignment:
Q  507 ttttcataagctatctaggatagcttatgaaaac 540  Q
    |||||||||||| |||||||||||||||||||||    
T  9556280 ttttcataagctttctaggatagcttatgaaaac 9556247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 10884550 - 10884583
Alignment:
Q  507 ttttcataagctatctaggatagcttatgaaaac 540  Q
    |||||||||||| |||||||||||||||||||||    
T  10884550 ttttcataagctctctaggatagcttatgaaaac 10884583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 49 - 367
Target Start/End: Original strand, 48732809 - 48733130
Alignment:
Q  49 tacagaaactgagcatagaaattttaacaagtcttgcattggaagatgaggcatcagaaaggattggaggtacaggtggagtgcttaaagaattgttcaa 148  Q
    ||||||||||||||||||| ||||||||||  || ||||| || ||||| ||| |||| || ||||| |||||||||||| ||||| |||||||||||||    
T  48732809 tacagaaactgagcatagagattttaacaaacctagcattagatgatgatgcaacagagagaattggtggtacaggtggaatgcttcaagaattgttcaa 48732908  T
Q  149 catatttttcagacaaaacattcctgaaaaccagaaa---gatgtaacaactgttgctggtgaggccttatcaatgctggcattagaaagcaagagcaac 245  Q
    |||| |||||| ||| | |   || ||| |   ||||   | |||||||  || ||| |  |||||| || | ||| ||||||||||||||||||| |||    
T  48732909 catacttttcaaacacagcgaaccagaagattggaaacatggtgtaacagttgctgccgccgaggccctagcgatgttggcattagaaagcaagagtaac 48733008  T
Q  246 tgtcatcggattttgaagttgagagtgctcgaaaggcttattgaagcattgaaagtaccgctgattcgtgtcagtgccgctagaattctaagaaatttat 345  Q
    |||||| | ||||||||| ||| | | || | ||||||| | ||| |||||||||  ||| || ||||  |||  || |||  |||||||||||||||||    
T  48733009 tgtcattgaattttgaagctgaaattacttggaaggcttgtagaatcattgaaagatccgttgcttcgcatcaaggcagctgaaattctaagaaatttat 48733108  T
Q  346 gcaactacagtggatcagaatg 367  Q
    ||| ||| ||||| ||||||||    
T  48733109 gcatctatagtggctcagaatg 48733130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 494 - 539
Target Start/End: Original strand, 1706618 - 1706663
Alignment:
Q  494 aagctttaagctgttttcataagctatctaggatagcttatgaaaa 539  Q
    ||||| |||||||||||||||| |||||| ||| ||||||||||||    
T  1706618 aagctataagctgttttcataaactatcttggacagcttatgaaaa 1706663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 495 - 539
Target Start/End: Original strand, 20370880 - 20370924
Alignment:
Q  495 agctttaagctgttttcataagctatctaggatagcttatgaaaa 539  Q
    |||||||||||||||||||| |||||||||||  |||||||||||    
T  20370880 agctttaagctgttttcatatgctatctaggagtgcttatgaaaa 20370924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 499 - 539
Target Start/End: Original strand, 20351149 - 20351189
Alignment:
Q  499 ttaagctgttttcataagctatctaggatagcttatgaaaa 539  Q
    ||||| |||||||||||||||||| ||||||||||| ||||    
T  20351149 ttaagatgttttcataagctatctcggatagcttataaaaa 20351189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 488 - 539
Target Start/End: Original strand, 1433538 - 1433589
Alignment:
Q  488 ttatgtaagctttaagctgttttcataagctatctaggatagcttatgaaaa 539  Q
    |||| |||||||||||| ||||||||||||||||  ||| ||||||||||||    
T  1433538 ttatttaagctttaagcagttttcataagctatcctggagagcttatgaaaa 1433589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 539
Target Start/End: Original strand, 27028833 - 27028872
Alignment:
Q  500 taagctgttttcataagctatctaggatagcttatgaaaa 539  Q
    ||||||||||||||||||||||| ||| ||||||||||||    
T  27028833 taagctgttttcataagctatcttggagagcttatgaaaa 27028872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 541
Target Start/End: Original strand, 25097388 - 25097429
Alignment:
Q  500 taagctgttttcataagctatctaggatagcttatgaaaact 541  Q
    ||||||||||||||||||||||  ||| ||||||||||||||    
T  25097388 taagctgttttcataagctatcctggagagcttatgaaaact 25097429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Original strand, 26473781 - 26473814
Alignment:
Q  507 ttttcataagctatctaggatagcttatgaaaac 540  Q
    |||||||||||| |||||||||||||||||||||    
T  26473781 ttttcataagctctctaggatagcttatgaaaac 26473814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 507 - 539
Target Start/End: Original strand, 10075580 - 10075612
Alignment:
Q  507 ttttcataagctatctaggatagcttatgaaaa 539  Q
    |||||||||||| ||||||||||||||||||||    
T  10075580 ttttcataagctctctaggatagcttatgaaaa 10075612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 500 - 540
Target Start/End: Complemental strand, 25097434 - 25097394
Alignment:
Q  500 taagctgttttcataagctatctaggatagcttatgaaaac 540  Q
    ||||| ||||||||||||| || ||||||||||||||||||    
T  25097434 taagcagttttcataagctctccaggatagcttatgaaaac 25097394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 493 - 535
Target Start/End: Original strand, 27548258 - 27548300
Alignment:
Q  493 taagctttaagctgttttcataagctatctaggatagcttatg 535  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||    
T  27548258 taagctataagctgttttcataagctatcttggataacttatg 27548300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 539
Target Start/End: Original strand, 529379 - 529416
Alignment:
Q  502 agctgttttcataagctatctaggatagcttatgaaaa 539  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  529379 agctgttttcataagctatcttggagagcttatgaaaa 529416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 499 - 539
Target Start/End: Complemental strand, 48917415 - 48917375
Alignment:
Q  499 ttaagctgttttcataagctatctaggatagcttatgaaaa 539  Q
    ||||| |||||||||||||||||| ||| ||||||||||||    
T  48917415 ttaagttgttttcataagctatcttggagagcttatgaaaa 48917375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 491 - 537
Target Start/End: Original strand, 25964436 - 25964482
Alignment:
Q  491 tgtaagctttaagctgttttcataagctatctaggatagcttatgaa 537  Q
    |||||||| ||||||||||||||||||||||  ||| ||||||||||    
T  25964436 tgtaagctataagctgttttcataagctatcccggaaagcttatgaa 25964482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 507 - 539
Target Start/End: Complemental strand, 16790439 - 16790407
Alignment:
Q  507 ttttcataagctatctaggatagcttatgaaaa 539  Q
    |||||||||||||||| ||||||||||||||||    
T  16790439 ttttcataagctatcttggatagcttatgaaaa 16790407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 507 - 540
Target Start/End: Complemental strand, 25479622 - 25479589
Alignment:
Q  507 ttttcataagctatctaggatagcttatgaaaac 540  Q
    |||||||||||| |||||||||||||||||||||    
T  25479622 ttttcataagctctctaggatagcttatgaaaac 25479589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University