View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17704_high_26 (Length: 225)
Name: NF17704_high_26
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17704_high_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 5416365 - 5416179
Alignment:
| Q |
14 |
aaaatcataaactaagcagaaaccaaccgtgtattaacaattaatacaaatattcaaagatctcaaaatatgaaagatcttattctctcactttacttac |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5416365 |
aaaatcataaactaagcagaaaccaaccgtgcattaacaattaatacaaatattcaaagatctcaaaatatgaaagatcttattatctcactttacttac |
5416266 |
T |
|
| Q |
114 |
atttattttaaacaacttttttaaaaaagttgaaatatgatacattattagtgaatagtgtatattttcttggagtttaaactatagctaaggt |
207 |
Q |
| |
|
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5416265 |
att-------aacaactttttttaaaaagttgaaatatgatacattattagtgaatagtgtatattttcttggagtttaaaatatagctaaggt |
5416179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 5435402 - 5435351
Alignment:
| Q |
15 |
aaatcataaactaagcagaaaccaaccgtgtattaacaattaatacaaatat |
66 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| | |||||| |||||| |
|
|
| T |
5435402 |
aaatcataaactaagcagaaaccaaccgtgcattagcggttaatataaatat |
5435351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University