View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17704_high_3 (Length: 614)
Name: NF17704_high_3
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17704_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 1e-67; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 11 - 199
Target Start/End: Original strand, 14113005 - 14113197
Alignment:
| Q |
11 |
cataggccaagtttttcaatgtagcctcatgaagatccaaatcagagattgcagtggcgtc---gtcagtggagaagaacaccttcaaagatttgggttt |
107 |
Q |
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| T |
14113005 |
cataagccaagtttttcaatgtagccttatgaagatccaaatcagagattgcaatggcgtcgtcgtcagtggagaagaacaccttcaaagatttgggttt |
14113104 |
T |
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| Q |
108 |
cttttccatacctggtactttttgtaggatgatgagcttgaannnnnnnnatcagaactagacattgaatttttgcata-atgtggacataat |
199 |
Q |
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| T |
14113105 |
cttttccatacctggtactttttgtaggatgatgagcttgaattttttttatcagaactagacattgaatttttgcatatctgtggacataat |
14113197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 560 - 601
Target Start/End: Original strand, 14115865 - 14115906
Alignment:
| Q |
560 |
tgttcttccatcatgattgtgtgttttgggaatgttgttttt |
601 |
Q |
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| T |
14115865 |
tgttcttccatcatgattgtgtgttttgggaatgttgttttt |
14115906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 14073813 - 14073859
Alignment:
| Q |
11 |
cataggccaagtttttcaatgtagcctcatgaagatccaaatcagag |
57 |
Q |
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| T |
14073813 |
cataagccatgtttttcaatgtagcctcatgaagatccaaatcagag |
14073859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 14081289 - 14081335
Alignment:
| Q |
11 |
cataggccaagtttttcaatgtagcctcatgaagatccaaatcagag |
57 |
Q |
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| T |
14081289 |
cataagccatgtttttcaatgtagcctcatgaagatccaaatcagag |
14081335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 14104760 - 14104806
Alignment:
| Q |
11 |
cataggccaagtttttcaatgtagcctcatgaagatccaaatcagag |
57 |
Q |
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| T |
14104760 |
cataagccatgtttttcaatgtagcctcatgaagatccaaatcagag |
14104806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 330 - 468
Target Start/End: Complemental strand, 31367357 - 31367219
Alignment:
| Q |
330 |
tctatgcttcattttagatcaaataattttacaatttcaaatgattctacccgcgtttacttttttgcattgcttcaaaatttgaagctctacatttgaa |
429 |
Q |
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| T |
31367357 |
tctatgcttcatttttgatcaaatagttccacaatttcaaatgattctactcagttttacttatatgcactgttttaaatcttgaggcattagattcaaa |
31367258 |
T |
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| Q |
430 |
tcattgtctcaagctgtgggatatgaattcttgctaaaa |
468 |
Q |
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| T |
31367257 |
tcattgtctcaagctatcagatattaattcttgctaaaa |
31367219 |
T |
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