View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17704_high_7 (Length: 441)

Name: NF17704_high_7
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17704_high_7
NF17704_high_7
[»] chr7 (1 HSPs)
chr7 (13-423)||(28640427-28640854)


Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 423
Target Start/End: Original strand, 28640427 - 28640854
Alignment:
Q  13 aatataccttgactaactaactatatatcaattttcttgtcnnnnnnnctactgtatatttcaacttcaaagcatggtccatattcatcgaattataaca 112  Q
    |||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28640427 aatataccttgactaactaactatatatcaattttcttgtcaaaaaaactactgtatatttcaacttcaaagcatggtccatattcatcgaattataaca 28640526  T
Q  113 tatccatttttagtttagtgagatctaaagaaaatttcgtcacgtcttta---ggataagatagccaactaagtcacaataatacactagaaacagaaat 209  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  28640527 tatccatttttagtttagtg---tctaaagaaaatttcgtcacgtctttattaggataagatagccaactaagtcacaataatacactagaaacagaaat 28640623  T
Q  210 aaaatattgacatagagaacatgattgacgtattcacaaacaattagaaaatattagaaataaaaagtcaaatgtggaaaatttatattat--------- 300  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  28640624 taaatattgacatagagaacatgattgacgtattcacaaacaattagaaaatattagaaataaaaagtcaaatgtggaaaatttatattataattactat 28640723  T
Q  301 --------aattacgaaacttgagagaaaatgctgaaatataaaattaatctgtattccgtctgtttcgcacaatgattaccaaaattatatacaatttt 392  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28640724 aaataaaaaattacgaaacttgagagaaaatgctgaaatataaaattaatctgtattccgtctgtttcgcacaatgattaccaaaattatatacaatttt 28640823  T
Q  393 catttcataaatttaccaaaatcatatacat 423  Q
    ||||||||||| |||||||||||||||||||    
T  28640824 catttcataaacttaccaaaatcatatacat 28640854  T

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