View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17704_high_8 (Length: 412)
Name: NF17704_high_8
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17704_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 9 - 395
Target Start/End: Original strand, 42849442 - 42849828
Alignment:
| Q |
9 |
gaagaaaatgccaataaagagaagtcagttacagaaggtgcaaaccctgaagtggaaattattggaagtgatttacaaggagtagaagacttgaataatg |
108 |
Q |
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| T |
42849442 |
gaagaagatgccaataaagagaagtcggttacagaaggtgcaaaccctgaagtggaaattattggaagtgatttacaaggagtagaagacttgaataatg |
42849541 |
T |
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| Q |
109 |
gaaacttgccactggaggattttaattctggaattgatggagaagatgccaatagtgataaatcagctctagttggtaaaaaccttgaaggggaaattac |
208 |
Q |
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| T |
42849542 |
gaaacttgccactggaggattttaattctggaattgatggagaagatgccaatagtgataaatcagctctagttggtaaaaaacttgaaggggaaattac |
42849641 |
T |
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| Q |
209 |
tggaaacaatatagcaggagaaaaattaaataatggaaagtggccacaagagggagaaggagaggatttaaatatagaagatcctaacaatgaccaatca |
308 |
Q |
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| T |
42849642 |
tggaaacaatatagcaggagaaaaattaaataatggaaagtggccacaagagggagaaggagaggatttaaatatagaagatcctaacaatgaccaatca |
42849741 |
T |
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| Q |
309 |
gctatagaggataccaaatctgaagtggacacaacagaaggtactacaacaaaaaatgcaagcaatgagattgtagatacattagat |
395 |
Q |
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| T |
42849742 |
gctatagaggataccaaatctgaagtggacacaacagaaggtactacaacaaaaaatgcaagcaatgagattgtagatacattagat |
42849828 |
T |
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