View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17704_low_11 (Length: 378)
Name: NF17704_low_11
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17704_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 34228535 - 34228172
Alignment:
| Q |
1 |
accaaaatcataagaaagaacgtcggattgaaactgtctggaccaagagacttatcctgatgcatttgaaataaatcttgcttaagccctttctttgtaa |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34228535 |
accaaaaacataagaaagaacgtcggattgaaactgtctggaccaagagacttatcctgatgcatttgaaataaatcttgcttaagccctttctttgtaa |
34228436 |
T |
|
| Q |
101 |
taggtatcagactctggttatattccaaagtaactctactatgaatgagttccaagacaggtttgtggacaccatcattaggcctgaacaactcatcaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34228435 |
taggtatcagactctggttatattccaaagtaactctactatgaatgagttccaagacaggtttgtggacaccatcattaggcctgaacaactcatcaaa |
34228336 |
T |
|
| Q |
201 |
atatttcttagctacatcacacaactcctcttggctagtaacctcctcgcgtcaatcgttaaccaatttagttaccttcttcttcttgatcctcgtcatt |
300 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34228335 |
atatttcttggctacatcacacaactcctcttggctagtaacctcctcgcgtcaatcgttaaccaatttagttaccttcttcttcttgatcctcatcatt |
34228236 |
T |
|
| Q |
301 |
gctgacatatgaaaatatttagtattcaagtcaccctcctgatccggtgcgttttagctctctg |
364 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34228235 |
gttgacatatgaaaatatttagtattcaagtcaccctcctgatccggtgcgttttagctctctg |
34228172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University