View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17704_low_12 (Length: 376)
Name: NF17704_low_12
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17704_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 9628862 - 9629081
Alignment:
| Q |
13 |
acaatgtcaccatctccattttcatattctatttcagtagcaaaatagtatgggttggctccactatcgactgtaaatgttatcgatgtcccaaaagagc |
112 |
Q |
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| T |
9628862 |
acaatgtcaccatctccattttcatattctatttctgtagcaaaatagtatgggttggctccactatcgactgcaaatgttattgatgtcccaaaagagc |
9628961 |
T |
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| Q |
113 |
atgcaaccctaaaattaaaattttagaatatgtcatactaattaaaaagaaacataaatgtatgagagacgtgagataataatttattacactacaaaaa |
212 |
Q |
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| T |
9628962 |
atgcaaccctaaaattaaaaatttagaatatgtcatattaattacaaagaaacataaatgtgtaagagacgtgagataataatttgtt--actataaaaa |
9629059 |
T |
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| Q |
213 |
tactaaaagaattgctacaaaa |
234 |
Q |
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| T |
9629060 |
taataaaacaattgctataaaa |
9629081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 231 - 369
Target Start/End: Original strand, 9629158 - 9629297
Alignment:
| Q |
231 |
aaaaagtaaaggaatttttaatttcatgattttctgaataacattattagtaacttttttattgaagtataccatttcaaaaactaaaatggagtattta |
330 |
Q |
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|||| ||||||||||||||||||||||||||||||| | ||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9629158 |
aaaaggtaaaggaatttttaatttcatgattttctgtaaaacattattggtaactttt-tattgaagtatactatttcaaaaactaaaatggagtattta |
9629256 |
T |
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| Q |
331 |
accaattttggagaagac--tatatttattctttcctcttc |
369 |
Q |
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| T |
9629257 |
accaattttggagaagactatatatttattctttcctcttc |
9629297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 17444003 - 17444107
Alignment:
| Q |
18 |
gtcaccatctccattttcatattctatttcagtagcaaaatagtatgggttggctccactatcgactgtaaatgttatcgatgtcccaaaagagcatgca |
117 |
Q |
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|||||||| ||||||||||||||||||||| || |||||| ||||||||||||||||| |||| | ||| || ||| || | ||||||||||||||| |
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| T |
17444003 |
gtcaccatttccattttcatattctatttctgttgcaaaacagtatgggttggctccattatcaattgtgaagactattgaatttccaaaagagcatgca |
17444102 |
T |
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| Q |
118 |
accct |
122 |
Q |
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||||| |
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| T |
17444103 |
accct |
17444107 |
T |
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