View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17704_low_13 (Length: 371)
Name: NF17704_low_13
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17704_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 15 - 355
Target Start/End: Original strand, 13864398 - 13864748
Alignment:
| Q |
15 |
acagacgacatgatcaacaacccacctactggcctaccttaaccaaaatcacaagaatcttttttccctttt----------tgagtaacacaagaatct |
104 |
Q |
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| T |
13864398 |
acagacgacatgatcaacaacccacctactggcctaccttaaccaaaatcacaagaatcttttttccctttttttccttttttgagtaacacaagaatct |
13864497 |
T |
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| Q |
105 |
tcacatcatatattactacctcgattatttctcccaagaagtccttccataatcacttttttcttatactcctcagaatcaaaatctacatcattttttg |
204 |
Q |
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| T |
13864498 |
tcacatcatatattactacctcgattatttctcccaagaagtccttccataatcacttttttcttatactcctcagaatcaaaatctacatcattctttg |
13864597 |
T |
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| Q |
205 |
acattattttggcaccatcttcctcataatttccaccaccattatttctaaaacgtggtataaaatacaaccatgctgaagtacatagaatggcacaaaa |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13864598 |
acattattttggcaccatcttcctcataatttccaccaccactatttctaaaacgtggtataaaatacaaccatgctgaagtacatagaatggcacaaaa |
13864697 |
T |
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| Q |
305 |
acgaccccaaaatatcattatgagtaaggtcacacctagtatggacattcc |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13864698 |
acgaccccaaaatatcattatgagtaaggtcacacctagtatggacattcc |
13864748 |
T |
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