View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17704_low_15 (Length: 363)
Name: NF17704_low_15
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17704_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 3122028 - 3122374
Alignment:
| Q |
1 |
gaaatcatagaaaatggcatttggaaataaaatattgtttattgactggtgaataataataataattaatgannnnnnnnnnnaaggaataataattaat |
100 |
Q |
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| T |
3122028 |
gaaatcatagaaaatggcatttggaaataaaatattgtttattgattggtgaataataataataattaatgatttttttttt-aaggaataataattaat |
3122126 |
T |
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| Q |
101 |
gattgataaatttttaaagaaagacggcccccatagaatcataatggagctattgattaagattatcgaacaataaaatttgatgttatgctacacatga |
200 |
Q |
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| T |
3122127 |
gattgataattttttaaagaaagacggcccccatagaatcataatggagctattgattaagattatcgaacaataaaatttgatgttatgctacacatga |
3122226 |
T |
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| Q |
201 |
aaattgtctcatgtatgatatttacttcgaaattttatcttatgtctaactagtaaaaatttcacaaagaactattatacattaaataagccactaagtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
3122227 |
aaattgtctcatgtatgatatttacttcgaaattttatcttatgtctaactagtaagaatttcacaaagaactattatacattagataagccactaagtg |
3122326 |
T |
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| Q |
301 |
agggttgagtggattaagtgtagtaagcatgaggtcctaagttcaaac |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3122327 |
agggttgagtggattaagtgtagtaagcatgaggtcctaagttcaaac |
3122374 |
T |
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