View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17704_low_16 (Length: 341)

Name: NF17704_low_16
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17704_low_16
NF17704_low_16
[»] chr7 (2 HSPs)
chr7 (13-323)||(5897547-5897860)
chr7 (197-258)||(5897053-5897114)
[»] chr1 (6 HSPs)
chr1 (66-151)||(28108129-28108215)
chr1 (97-180)||(46916001-46916083)
chr1 (66-115)||(36979763-36979812)
chr1 (113-185)||(68997-69069)
chr1 (61-93)||(46878251-46878283)
chr1 (97-146)||(46518645-46518694)
[»] chr8 (2 HSPs)
chr8 (107-154)||(42456928-42456975)
chr8 (106-154)||(5920867-5920915)
[»] chr3 (3 HSPs)
chr3 (113-176)||(51380944-51381007)
chr3 (62-115)||(39028200-39028253)
chr3 (106-146)||(27844700-27844740)
[»] chr2 (5 HSPs)
chr2 (66-150)||(29699536-29699626)
chr2 (116-154)||(12037314-12037352)
chr2 (115-181)||(27249849-27249915)
chr2 (97-146)||(29923933-29923982)
chr2 (126-154)||(42013385-42013413)
[»] chr4 (3 HSPs)
chr4 (106-176)||(21512003-21512073)
chr4 (54-94)||(43148960-43149000)
chr4 (67-109)||(21512101-21512143)
[»] chr5 (3 HSPs)
chr5 (122-176)||(37283757-37283811)
chr5 (113-157)||(9379211-9379255)
chr5 (55-115)||(10315791-10315851)


Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 323
Target Start/End: Original strand, 5897547 - 5897860
Alignment:
Q  13 attattcttaaaattaacacactataaagagagaaaagt---gtattcaactaagactgaaacacaccagaaaaagacgtaaatgcacatcagcaattaa 109  Q
    |||| |||||||||||||||||||||||||||||||| |   ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5897547 attactcttaaaattaacacactataaagagagaaaacttttgtattcaactaaggctgaaacacaccagaaaaagacgtaaatgcacatcagcaattaa 5897646  T
Q  110 ttgccgatgaagttatattgataaattactggtgtttcctagcatcgaataaactgtgagcaacattattcctaaagagaaggtaattaagaaaacctga 209  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| | || ||||| ||||||||||||||||||||||||||| ||||||||||||    
T  5897647 ttgccgatgaagttatattgataaattactggtgtttcttagcatcgagtgaaatgtgaacaacattattcctaaagagaaggtaataaagaaaacctga 5897746  T
Q  210 gcttggccttgtgcctgtccagcctgatagctcatctgttggggatccatctttgaaattataatgaaatgaatgaattgaatatcaagaataggtttga 309  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  5897747 gcttggccttgggcctgtccagcctgatagctcatctgttggggatccatctttgaaattgtaatgaaatgaatgaattgaatatcaagaacaggtttga 5897846  T
Q  310 gatgaggattaaat 323  Q
    ||||||||||||||    
T  5897847 gatgaggattaaat 5897860  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 5897053 - 5897114
Alignment:
Q  197 taagaaaacctgagcttggccttgtgcctgtccagcctgatagctcatctgttggggatcca 258  Q
    |||||||||||||||||||||||| |||||||||| || ||||||||||||||||| |||||    
T  5897053 taagaaaacctgagcttggccttgggcctgtccagtctcatagctcatctgttgggaatcca 5897114  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 66 - 151
Target Start/End: Complemental strand, 28108215 - 28108129
Alignment:
Q  66 ctgaaacacaccagaaaaa-gacgtaaatgcacatcagcaattaattgccgatgaagttatattgataaattactggtgtttcctag 151  Q
    |||||||| |||||||||| ||||||||||  |||| | |  ||| ||||||||||||||||||| ||||||||| |||||||||||    
T  28108215 ctgaaacaaaccagaaaaaagacgtaaatgttcatcggtagctaactgccgatgaagttatattggtaaattactagtgtttcctag 28108129  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 180
Target Start/End: Original strand, 46916001 - 46916083
Alignment:
Q  97 catcagcaattaattgccgatgaagttatattgataaattactggtgtttcctagcatcgaataaactgtgagcaacattattc 180  Q
    |||| ||| |||| |||||||||| | |||||| |||||||||||||||||||| |||||| | || ||||| |||||||||||    
T  46916001 catctgcagttaactgccgatgaaat-atattggtaaattactggtgtttcctatcatcgagtgaaatgtgaacaacattattc 46916083  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 36979763 - 36979812
Alignment:
Q  66 ctgaaacacaccagaaaaagacgtaaatgcacatcagcaattaattgccg 115  Q
    |||||||||||||||||||||||||||||   ||| ||||||||||||||    
T  36979763 ctgaaacacaccagaaaaagacgtaaatgttaatcggcaattaattgccg 36979812  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 68997 - 69069
Alignment:
Q  113 ccgatgaagttatattgataaattactggtgtttcctagcatcgaataaactgtgagcaacattattcctaaa 185  Q
    ||||||| ||||||||||||||||||| |||| ||||||||| || | || ||||| ||||||| ||| ||||    
T  68997 ccgatgatgttatattgataaattactagtgtgtcctagcattgagtgaagtgtgaacaacattcttcataaa 69069  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 46878283 - 46878251
Alignment:
Q  61 taagactgaaacacaccagaaaaagacgtaaat 93  Q
    |||||||||||||||||||||||||||||||||    
T  46878283 taagactgaaacacaccagaaaaagacgtaaat 46878251  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 46518694 - 46518645
Alignment:
Q  97 catcagcaattaattgccgatgaagttatattgataaattactggtgttt 146  Q
    |||||||| |||| |||||||| | |||||||| ||||||||||||||||    
T  46518694 catcagcagttaaatgccgatggaattatattggtaaattactggtgttt 46518645  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 42456928 - 42456975
Alignment:
Q  107 taattgccgatgaagttatattgataaattactggtgtttcctagcat 154  Q
    ||||| ||||||| ||||||||| ||||||||||||||||||||||||    
T  42456928 taattaccgatgaggttatattggtaaattactggtgtttcctagcat 42456975  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 5920867 - 5920915
Alignment:
Q  106 ttaattgccgatgaagttatattgataaattactggtgtttcctagcat 154  Q
    |||| |||||||||  |||||||| |||| |||||||||||||||||||    
T  5920867 ttaactgccgatgagattatattggtaaagtactggtgtttcctagcat 5920915  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 51381007 - 51380944
Alignment:
Q  113 ccgatgaagttatattgataaattactggtgtttcctagcatcgaataaactgtgagcaacatt 176  Q
    ||||||| ||||||||||||||||||| |||||||||||||| || | || ||||| |||||||    
T  51381007 ccgatgatgttatattgataaattactagtgtttcctagcattgagtgaagtgtgaacaacatt 51380944  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 39028253 - 39028200
Alignment:
Q  62 aagactgaaacacaccagaaaaagacgtaaatgcacatcagcaattaattgccg 115  Q
    |||||||||||||||||||||||||||||||||  |||| ||| |||| |||||    
T  39028253 aagactgaaacacaccagaaaaagacgtaaatgttcatcggcagttaactgccg 39028200  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 27844700 - 27844740
Alignment:
Q  106 ttaattgccgatgaagttatattgataaattactggtgttt 146  Q
    |||| |||||||||| ||||||||||||||||||| |||||    
T  27844700 ttaactgccgatgaaattatattgataaattactgatgttt 27844740  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 150
Target Start/End: Original strand, 29699536 - 29699626
Alignment:
Q  66 ctgaaacacaccagaaaaagacgtaaatgcacatcagcaattaattg------ccgatgaagttatattgataaattactggtgtttccta 150  Q
    |||||||||||||||||||||||||||||  |||| ||| |||| ||      ||||||| ||||||||| ||||||||| ||||||||||    
T  29699536 ctgaaacacaccagaaaaagacgtaaatgtccatcggcagttaactgccactaccgatgaggttatattggtaaattactagtgtttccta 29699626  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 12037352 - 12037314
Alignment:
Q  116 atgaagttatattgataaattactggtgtttcctagcat 154  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  12037352 atgaggttatattgataaattactggtgtttcctagcat 12037314  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 27249849 - 27249915
Alignment:
Q  115 gatgaagttatattgataaattactggtgtttcctagcatcgaataaactgtgagcaacattattcc 181  Q
    ||||||||||||||||||||||||| |||||||||| ||| || | || ||||| ||||||| ||||    
T  27249849 gatgaagttatattgataaattactagtgtttcctaacattgagtgaagtgtgaacaacattcttcc 27249915  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 29923933 - 29923982
Alignment:
Q  97 catcagcaattaattgccgatgaagttatattgataaattactggtgttt 146  Q
    ||||||||||||| ||||||||| ||||||||  ||||||||||||||||    
T  29923933 catcagcaattaactgccgatgaggttatattagtaaattactggtgttt 29923982  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 154
Target Start/End: Complemental strand, 42013413 - 42013385
Alignment:
Q  126 attgataaattactggtgtttcctagcat 154  Q
    |||||||||||||||||||||||||||||    
T  42013413 attgataaattactggtgtttcctagcat 42013385  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 21512073 - 21512003
Alignment:
Q  106 ttaattgccgatgaagttatattgataaattactggtgtttcctagcatcgaataaactgtgagcaacatt 176  Q
    |||| ||||||| ||||||||||||||||||| | |||||||||||||| || | || ||||| |||||||    
T  21512073 ttaactgccgataaagttatattgataaattagtagtgtttcctagcattgagtgaagtgtgaacaacatt 21512003  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 43149000 - 43148960
Alignment:
Q  54 attcaactaagactgaaacacaccagaaaaagacgtaaatg 94  Q
    ||||||||||| ||||||||||||||||||| |||||||||    
T  43149000 attcaactaaggctgaaacacaccagaaaaaaacgtaaatg 43148960  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 109
Target Start/End: Complemental strand, 21512143 - 21512101
Alignment:
Q  67 tgaaacacaccagaaaaagacgtaaatgcacatcagcaattaa 109  Q
    ||||||||||||||||||||||||||||  |||||||| ||||    
T  21512143 tgaaacacaccagaaaaagacgtaaatgtccatcagcagttaa 21512101  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 37283757 - 37283811
Alignment:
Q  122 ttatattgataaattactggtgtttcctagcatcgaataaactgtgagcaacatt 176  Q
    |||||||||||||||||| |||||||||||||| || | || ||||| |||||||    
T  37283757 ttatattgataaattactcgtgtttcctagcattgagtgaagtgtgaacaacatt 37283811  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 9379255 - 9379211
Alignment:
Q  113 ccgatgaagttatattgataaattactggtgtttcctagcatcga 157  Q
    ||||||||||||||||||||||||||||  |||| | ||||||||    
T  9379255 ccgatgaagttatattgataaattactgtagttttcaagcatcga 9379211  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 10315851 - 10315791
Alignment:
Q  55 ttcaactaagactgaaacacaccagaaaaagacgtaaatgcacatcagcaattaattgccg 115  Q
    |||||||||| |||||  | | ||||||||||||||||||| |||| ||| ||||||||||    
T  10315851 ttcaactaaggctgaattatatcagaaaaagacgtaaatgcccatcggcagttaattgccg 10315791  T

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