View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17704_low_17 (Length: 322)
Name: NF17704_low_17
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17704_low_17 |
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| [»] scaffold0051 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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| [»] scaffold0014 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 3643434 - 3643681
Alignment:
| Q |
18 |
aaaaggcggagaaacttctttgtgaaatgatcattagaggcctcctataatgcaaacactaggtaagatgatctttcattatataattggttattttgat |
117 |
Q |
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| T |
3643434 |
aaaaggcggagaaacttcttcgtgaaatgatcattagaggcctcctattatgcaaacactaggtaagatgatctttcattatataattggttattttgat |
3643533 |
T |
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| Q |
118 |
gacaactatgcaacttctgtgagnnnnnnnngtttacaattatacaaaataaggtggaccactcaatgttcttactatcactttaattttaatcaaaatc |
217 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| | | |
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| T |
3643534 |
gacaactatgcaacttctgtgagttttttt--tttacaactatacaaaataaggttgaccactcaatgttctaactatcactttaattttaatcaatagc |
3643631 |
T |
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| Q |
218 |
catgagttgttgttatgttcatttcaatattagagtggtgtctatggttg |
267 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3643632 |
catgagttgttgttatgttcatttcaatattagagtggtgtctatggttg |
3643681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 16351447 - 16351699
Alignment:
| Q |
18 |
aaaaggcggagaaacttctttgtgaaatgatcattagaggcctcctataatgcaaacactaggtaagatgatctttcattatataattggttattttgat |
117 |
Q |
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| T |
16351447 |
aaaaggcacagaaacttcttcgtgaaatggtcattaaaggtctcctataatggaaacactaggtaagatgatctctcattatataattggttattttgat |
16351546 |
T |
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| Q |
118 |
gacaactatgcaacttctgtga---gnnnnnnnngtttacaattatacaaaataaggtggaccactcaatgttcttactatcactttaattttaatcaaa |
214 |
Q |
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| T |
16351547 |
gacaaatatgcaacttctgtgatttatttattttgtcgacaactatacaaataaaggtggaccactcaatgttctaactatcactttcattttaatcaaa |
16351646 |
T |
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| Q |
215 |
atccatgagttgttgttatgttcatttcaatattagagtggtgtctatggttg |
267 |
Q |
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| T |
16351647 |
agccatgagttgttgttatgttcatttcaatattagagtggcgtcaatggttg |
16351699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 11991709 - 11991957
Alignment:
| Q |
18 |
aaaaggcggagaaacttctttgtgaaatgatcattagaggcctcctataatgcaaacactaggtaagatgatctttcattatataattggttattttgat |
117 |
Q |
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| T |
11991709 |
aaaaggcggagaaacttctgcgtgaaatgattgctagaggtctcctatgatggaaacactaggtaagatgatttctcattatata-ttggttattttgtt |
11991807 |
T |
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| Q |
118 |
gacaactatgcaacttctgtgagnnnnnnnn---gtttacaattatacaaaataaggtggaccactcaatgttcttactatcactttaattttaatcaaa |
214 |
Q |
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| T |
11991808 |
gacaattgtgcaatcactatgatttatttattttgttgacaactatacaaaataaggtgaactactcaatgttctaattatccctttaattttaatcaaa |
11991907 |
T |
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| Q |
215 |
atccatgagttgttgttatgttcatttcaatattagagtggtgtctatggttg |
267 |
Q |
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| T |
11991908 |
agtcatga---gttgttatgttcatttcaatattagaatggtgtcaatggttg |
11991957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 158 - 258
Target Start/End: Complemental strand, 47354 - 47254
Alignment:
| Q |
158 |
tatacaaaataaggtggaccactcaatgttcttactatcactttaattttaatcaaaatccatgagttgttgttatgttcatttcaatattagagtggtg |
257 |
Q |
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||||||| ||||||||||| |||||||||||| |||||||||| |||||||||||| | |||| ||||||||||||||||||||||||||||| ||||| |
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| T |
47354 |
tatacaatataaggtggactactcaatgttctcactatcacttaaattttaatcaagagtcatgtgttgttgttatgttcatttcaatattagaatggtg |
47255 |
T |
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| Q |
258 |
t |
258 |
Q |
| |
|
| |
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|
| T |
47254 |
t |
47254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 125725 - 125654
Alignment:
| Q |
18 |
aaaaggcggagaaacttctttgtgaaatgatcattagaggcctcctataatgcaaacactaggtaagatgat |
89 |
Q |
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| T |
125725 |
aaaaggcggagaaacttcttcgtgaaatgattgctagaggtctacttaaatggaaacactaggtaagatgat |
125654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 140660 - 140748
Alignment:
| Q |
21 |
aggcggagaaacttctttgtgaaatgatcattagaggcctcctataatgcaaacactaggtaagatgatctttcattatataattggtt |
109 |
Q |
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||||||||||||||||| |||||||||| |||||| || |||||||| | ||||||||| ||||| | | |||||||| | |||||| |
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| T |
140660 |
aggcggagaaacttcttcgtgaaatgattgctagaggtctactataatggagacactaggtgagatggtttctcattatacatttggtt |
140748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 258
Target Start/End: Original strand, 137929 - 138018
Alignment:
| Q |
168 |
aaggtggaccactcaatgttcttactatcactttaattttaatcaaaatccatgagttgttgttatgttcatttcaatattagagtggtgt |
258 |
Q |
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||||||||| |||||||| ||| |||||||||||||| ||||| |||| |||| ||| || |||||||||||| |||||| | |||||| |
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| T |
137929 |
aaggtggactactcaatggtctcactatcactttaatgttaat-aaaactcatgttttgctgatatgttcatttcgatattataatggtgt |
138018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 29898472 - 29898512
Alignment:
| Q |
20 |
aaggcggagaaacttctttgtgaaatgatcattagaggcct |
60 |
Q |
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|||||||||||||||||| |||||||||| || |||||||| |
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| T |
29898472 |
aaggcggagaaacttcttcgtgaaatgattatgagaggcct |
29898512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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