View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17704_low_2 (Length: 682)
Name: NF17704_low_2
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17704_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 571; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 14 - 632
Target Start/End: Original strand, 32713134 - 32713752
Alignment:
| Q |
14 |
catcacaagccaaattcctatagcatccgcacaagaattcacttttctaggtatgacaaattcaaacttcccaatttagctccaataatcttttaatatt |
113 |
Q |
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| T |
32713134 |
catcacaagccaaattcctatagcatccgcacaagaattcgcttttctaggtatgacaaattcaaacttcccaatttagctccaataatcttttaatatt |
32713233 |
T |
|
| Q |
114 |
gattaacagactccacccaacagctgaccctcgttaccatactcaagattagacaccactagtcttgaatctacatgaagctccaatttatgaaagccac |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32713234 |
gattaacagactccacccaacagctgaccctcgttaccatactcaagattagacaccactagtcttgaatctacatgaagctccaatttatgaaagccac |
32713333 |
T |
|
| Q |
214 |
tctctctagctatctttaaatctttgaaaactctccagaactctgctacaaatatagtacacactcccatacactttgaaaatccacaagtccactcacc |
313 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32713334 |
tctctctagctatctttaaacctttgaaaactctccagaactctgctacaaatatactacacactcccatacactttgaaaatccacaagtccactcacc |
32713433 |
T |
|
| Q |
314 |
tctatcattacgcaaaattcctccgcaaccagacatactattacctctagtggctctacccaaatttagccgaatccatcccatcgccggaggttgtcac |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| || ||||||||||| |
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| T |
32713434 |
tctatcattacgcaaaattcctccgcaaccagacatactattacctctagtggctccaccaatatttagccgaatccatcccatcaccagaggttgtcac |
32713533 |
T |
|
| Q |
414 |
ctaatattctccattaccaaagtgctattatccatccacggtttaatgggaaacacaaaagtcgcatcttgaaccgttttgtttctccaattccacatcg |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
32713534 |
ctaatattctccattaccaaagtgctattatccatccacggtttaatgggcaacacaaaagtctcatcttgaaccattttgtttctccaattccacatcg |
32713633 |
T |
|
| Q |
514 |
catgacaagctgtttcccagaaaactacccatgtcacagtaccttcctgccccaactctatgctcatattaatattaatcgattcctccaagtctgctgc |
613 |
Q |
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| T |
32713634 |
catgacaagctgtttcccagaaaactacccatgtcgcagtaccttcctgccccaactctatgctcatattaatattaatcgattcctccaagtctgctgc |
32713733 |
T |
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| Q |
614 |
aaaaaattggacctgttgt |
632 |
Q |
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||||||||||||||||||| |
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| T |
32713734 |
aaaaaattggacctgttgt |
32713752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 629 - 665
Target Start/End: Original strand, 32713776 - 32713812
Alignment:
| Q |
629 |
ttgtaagtataagcaattgaaaattctccacttttag |
665 |
Q |
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| T |
32713776 |
ttgtaagtataagcaattgaaaattctccacttttag |
32713812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 161 - 424
Target Start/End: Complemental strand, 14220062 - 14219796
Alignment:
| Q |
161 |
attagacaccactagtcttgaatctacatgaagctccaatttatgaaagccactctctctagctatctttaaatctttgaaaac---tctccagaactct |
257 |
Q |
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|||||||||||||| | || |||||| || |||||||| ||||| ||| |||| |||| |||||||||||||| |||| |||| || || |||||| |
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| T |
14220062 |
attagacaccactacttttaaatctaaattaagctccattttataaaatccacgctctatagctatctttaaacctttaaaaaaaattccacataactct |
14219963 |
T |
|
| Q |
258 |
gctacaaatatagtacacactcccatacactttgaaaatccacaagtccactcacctctatcattacgcaaaattcctccgcaaccagacatactattac |
357 |
Q |
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|||||||| | | ||||||||||| | |||||||||||||||| | ||||||||||||||||||| ||||||| | | ||| | |||| |||||||| |
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| T |
14219962 |
gctacaaacacactacacactccctaaagctttgaaaatccacaaattcactcacctctatcattacaaaaaattcttacacaatcggacacactattac |
14219863 |
T |
|
| Q |
358 |
ctctagtggctctacccaaatttagccgaatccatcccatcgccggaggttgtcacctaatattctc |
424 |
Q |
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||||||| |||| | || |||||| |||| |||||| || || || ||| ||||||||| ||||| |
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| T |
14219862 |
ctctagtagctccattcatatttaggcgaacccatcctattgctggcagttttcacctaatgttctc |
14219796 |
T |
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