View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17704_low_21 (Length: 288)
Name: NF17704_low_21
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17704_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 270
Target Start/End: Complemental strand, 44419407 - 44419145
Alignment:
| Q |
7 |
atgtccaagaatatggttccaattattggcaactccaataaataagtgaaaatcttgaccaaaattccagtcatacgaggagctgaatgcaattgagaaa |
106 |
Q |
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| T |
44419407 |
atgtacaacaatatggttccaattattggcaactccaataaataagtgaaaatcttgaccaaaattccagtcatacgaggagctgaatgcaattgagaaa |
44419308 |
T |
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| Q |
107 |
atcattagcattttgtttgcatgcataaccattgaaagcaaataaagtttttagaagtgacaatattaatggtaatgtattgcacgtttagaatcttgtg |
206 |
Q |
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| T |
44419307 |
atcattagcattttgtttgcatgcataaccatcgaaagcaaataaagtttttagaagtgacaatattaatggtaatgtattgcacgtttagaatcttgtg |
44419208 |
T |
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| Q |
207 |
taagaaaaccatcaccaaacaaataccaacagaatgagaaaacaagaagctataaatgagaatg |
270 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44419207 |
taagaaaaccat-tccaaacaaataccaacagaatgagaaaacaagaagctataaatgagaatg |
44419145 |
T |
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