View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17704_low_24 (Length: 273)
Name: NF17704_low_24
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17704_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 6365049 - 6364803
Alignment:
| Q |
11 |
catcatcagtgaaattgagagtccaatttttgtataggaaaaaccggtaaaggcaaagtcggagagaaaacgtatctgaaaagtgttattacctccttgc |
110 |
Q |
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| T |
6365049 |
catcatcagtgaaattgagagtccaatttttgtataggaaaaaccggaaaaggcaaagtgggagagaaaacgtatctggcaagtgttattacctccttgc |
6364950 |
T |
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| Q |
111 |
caacattgggagataaacaaaatgctttcagtattgaatttgaatgggacaatgacatgggaactccaggagctttttatattgagaattatctgcaagg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6364949 |
caacattgggagataaacaaaatgctttcagtattgaatttgaatgggacaatgacatgggaactccaggagctttttatattgagaattatctgcaagg |
6364850 |
T |
|
| Q |
211 |
tggtgaattcttccttgtcagcttgactcttgaagatgttccaaacc |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6364849 |
tggtgaattcttccttgtcagcttgactcttgaagatgttccaaacc |
6364803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 99 - 257
Target Start/End: Complemental strand, 6354203 - 6354048
Alignment:
| Q |
99 |
ttacctccttgccaacattgggagataaacaaaatgctttcagtattgaatttgaatgggacaatgacatgggaactccaggagctttttatattgagaa |
198 |
Q |
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| T |
6354203 |
ttacctccataccaacattgggagacaaacaaaatgctttcagtattcattttgaatgggacagtaacatgggaattcccggagctttttacatcgataa |
6354104 |
T |
|
| Q |
199 |
ttatctgcaaggtggtgaattcttccttgtcagcttgactcttgaagatgttccaaacc |
257 |
Q |
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| T |
6354103 |
ttttatgcaa---ggtgaattcttccttgtgagtttgacacttgaagatgttccaaacc |
6354048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 257
Target Start/End: Complemental strand, 7461213 - 7461058
Alignment:
| Q |
99 |
ttacctccttgccaacattgggagataaacaaaatgctttcagtattgaatttgaatgggacaatgacatgggaactccaggagctttttatattgagaa |
198 |
Q |
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|||||||| | ||||||||||| || || ||| ||||||||||||| | ||| ||||||||| | |||||||| ||||||||||||||||||||| || |
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| T |
7461213 |
ttacctccctcccaacattgggggacaagcaatctgctttcagtattcattttcaatgggacagtaccatgggaattccaggagctttttatattgataa |
7461114 |
T |
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| Q |
199 |
ttatctgcaaggtggtgaattcttccttgtcagcttgactcttgaagatgttccaaacc |
257 |
Q |
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||| ||||| ||||||||||||||||| || ||||| ||||||||||||||||||| |
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| T |
7461113 |
ctatatgcaa---ggtgaattcttccttgtgagtttgacacttgaagatgttccaaacc |
7461058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 257
Target Start/End: Complemental strand, 6425754 - 6425593
Alignment:
| Q |
93 |
gtgttattacctccttgccaacattgggagataaacaaaatgctttcagtattgaatttgaatgggacaatgacatgggaactccaggagctttttatat |
192 |
Q |
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|||||||||||||| | |||||||| ||||| || |||||||||| |||| || | |||||||||| || ||||||||||| ||||||||| || ||||| |
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| T |
6425754 |
gtgttattacctccataccaacattaggagacaagcaaaatgcttacagtgttcattttgaatggggcagtgacatgggaattccaggagcattctatat |
6425655 |
T |
|
| Q |
193 |
tgagaattatctgcaaggtggtgaattcttccttgtcagcttgactcttgaagatgttccaaacc |
257 |
Q |
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|||||||| | ||||| ||| ||||||||||| || ||||| ||||||||||||||||||| |
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| T |
6425654 |
tgagaattttttgcaa---catgagttcttccttgtgagtttgacacttgaagatgttccaaacc |
6425593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 250
Target Start/End: Complemental strand, 6392665 - 6392531
Alignment:
| Q |
116 |
ttgggagataaacaaaatgctttcagtattgaatttgaatggga---caatgacatgggaactccaggagctttttatattgagaattatctgcaaggtg |
212 |
Q |
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|||||||| | ||||||||||||||||||| | ||||||||||| |||| ||||||||| |||||||||||| ||| || |||||| | |||| | |
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| T |
6392665 |
ttgggagacatacaaaatgctttcagtattcattttgaatgggatcccaatcacatgggaattccaggagctttctatgttaagaattttacgcaa---g |
6392569 |
T |
|
| Q |
213 |
gtgaattcttccttgtcagcttgactcttgaagatgtt |
250 |
Q |
| |
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|||| |||||||||| || ||||| |||||||||||| |
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| T |
6392568 |
atgaaatcttccttgtgagtttgacccttgaagatgtt |
6392531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 116 - 250
Target Start/End: Complemental strand, 6411805 - 6411671
Alignment:
| Q |
116 |
ttgggagataaacaaaatgctttcagtattgaatttgaatggga---caatgacatgggaactccaggagctttttatattgagaattatctgcaaggtg |
212 |
Q |
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|||||||| | ||||||||||||||||||| | ||||||||||| |||| ||||||||| |||||||||||| ||| || |||||| | |||| | |
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| T |
6411805 |
ttgggagacatacaaaatgctttcagtattcattttgaatgggatcccaatcacatgggaattccaggagctttctatgttaagaattttacgcaa---g |
6411709 |
T |
|
| Q |
213 |
gtgaattcttccttgtcagcttgactcttgaagatgtt |
250 |
Q |
| |
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|||| |||||||||| || ||||| |||||||||||| |
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| T |
6411708 |
atgaaatcttccttgtgagtttgacccttgaagatgtt |
6411671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 6265711 - 6265663
Alignment:
| Q |
107 |
ttgccaacattgggagataaacaaaatgctttcagtattgaatttgaat |
155 |
Q |
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||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
6265711 |
ttgccaacattgggagataaacaaacagctttcagcattgaatttgaat |
6265663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 252
Target Start/End: Complemental strand, 6333595 - 6333495
Alignment:
| Q |
149 |
tttgaatgggacaatgacatgggaactccaggagctttttatattgagaattatctgcaaggtggtgaattcttccttgtcagcttgactcttgaagatg |
248 |
Q |
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||||||||||||| ||| ||||||| ||||||||| ||||||||||| |||| ||| | || |||||||||||||| || ||||| ||||||||| |
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| T |
6333595 |
tttgaatgggacagtgagatgggaattccaggagcattttatattgaaaatttcatgcta---ggagaattcttccttgtaagtttgacgcttgaagata |
6333499 |
T |
|
| Q |
249 |
ttcc |
252 |
Q |
| |
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|||| |
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| T |
6333498 |
ttcc |
6333495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 6276170 - 6276119
Alignment:
| Q |
149 |
tttgaatgggacaatgacatgggaactccaggagctttttatattgagaatt |
200 |
Q |
| |
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||||||||||| | ||| ||||||| ||||||||| |||||||||||||||| |
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|
| T |
6276170 |
tttgaatgggatagtgagatgggaattccaggagcattttatattgagaatt |
6276119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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