View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17704_low_26 (Length: 251)
Name: NF17704_low_26
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17704_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 1687365 - 1687605
Alignment:
| Q |
1 |
ataagagaaatgtccgtaaaaaatcaggagaattagttctttatgaacggccattgttgaaagtcgacgtaaagtttgacgaagagacattacgtgtatg |
100 |
Q |
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| T |
1687365 |
ataagagaaatgtccgtaaaaaatcaggagaattagttctttatgaacggccattgttgaaagtcaatgtaaagtttgacgaagagacattacgtgtatg |
1687464 |
T |
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| Q |
101 |
gaacttgctcgttgctgaaaacaaacatgatgagaaagatgaacataagaggaggtattgggaggagataagaaaagcctatcatgaagctgttgaatca |
200 |
Q |
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| T |
1687465 |
gaacttgctcgttgctgaaaacaaacatgatgagaaagatgaacataagaggaggtattgggaggagataagaaaagcctatcatgaagctgttgaatca |
1687564 |
T |
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| Q |
201 |
tttttaactcgagtgcataacgttcaaggtatattttcatc |
241 |
Q |
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| T |
1687565 |
tttttaactcgagtgcataacgttcaaggtatattttcatc |
1687605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 41918486 - 41918728
Alignment:
| Q |
1 |
ataagagaaatgtccgtaaaaaatcaggagaattagttctttatgaacggccattgttgaaagtcgacgtaaagtttgacgaagagacattacgtgtatg |
100 |
Q |
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|||||||| ||||||| ||||| ||||| ||||||||||||||| | || |||| |||| || |||| | ||||||||||||||||||| ||||| |
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| T |
41918486 |
ataagagagatgtccgcaaaaagtcaggggaattagttctttataatcgaccatcagcagaagttgaagtaatgcttgacgaagagacattacgagtatg |
41918585 |
T |
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| Q |
101 |
gaacttgctcgttgctgaaaacaaacatgatgagaaagatgaacataagaggaggtattgggaggagataagaaaagcctatcatgaagctgttgaatca |
200 |
Q |
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||| || ||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| ||| ||| || ||| |||| |
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| T |
41918586 |
gaatttactcgttgttgaaaacaaacatgaagagaatgatgaacataagaggaggtattgggagatgataagaaaactctaccataaaatggttatatca |
41918685 |
T |
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| Q |
201 |
tttttaactcgagtgcataacgttcaaggtatattttcatctc |
243 |
Q |
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| T |
41918686 |
ttcttagatcaagtgcatactgttcaaggtatattttcatctc |
41918728 |
T |
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