View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17704_low_28 (Length: 248)
Name: NF17704_low_28
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17704_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 6628014 - 6627792
Alignment:
| Q |
18 |
aaaaaggcacctcaaacttaaatccacaccttctattagaactcctactaatccaaagagggcgaggtacgatgtgtacttgagtttctgcgaccaagac |
117 |
Q |
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| T |
6628014 |
aaaaaggcacctcaaacttaaatccacaccttctattagaactcctactaatccaaagagggcgaggtacgatgtgtacttgagtttctgcgaccaagac |
6627915 |
T |
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| Q |
118 |
aaagacctgcattcttttgttttcagtatctataatgctcttagtagaaaagctggagttgatgttttctgggagaatgagagggatggctatggagatc |
217 |
Q |
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| T |
6627914 |
aaagacctgcattcttttgttttcagtatctataatgctcttagtagaaaagctggagttgatgttttctgggagaatgagagggatggctatggagatc |
6627815 |
T |
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| Q |
218 |
gagaaaaaccaacctctgtgctc |
240 |
Q |
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| T |
6627814 |
gagaaaaaccaacctctgtgctc |
6627792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 6551652 - 6551605
Alignment:
| Q |
62 |
ctactaatccaaagagggcgaggtacgatgtgtacttgagtttctgcg |
109 |
Q |
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| T |
6551652 |
ctactaatccaaagaggaagaggttcaatgtgtacttgagtttctgcg |
6551605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 218
Target Start/End: Complemental strand, 6551578 - 6551502
Alignment:
| Q |
142 |
agtatctataatgctcttagtagaaaagctggagttgatgttttctgggagaatgagagggatggctatggagatcg |
218 |
Q |
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| T |
6551578 |
agtatctataagactcttagcataaaagctggatttgttgttttctgggaggaaaagaggcttggttatggagatcg |
6551502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 6645980 - 6646032
Alignment:
| Q |
65 |
ctaatccaaagagggcgaggtacgatgtgtacttgagtttctgcgaccaagac |
117 |
Q |
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| T |
6645980 |
ctaattcaaagagtgagaggtacaatgtgtacttgagtttctgtcaccaagac |
6646032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 6747731 - 6747767
Alignment:
| Q |
81 |
gaggtacgatgtgtacttgagtttctgcgaccaagac |
117 |
Q |
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| T |
6747731 |
gaggtaccatgtgtacttgagtttctgcgacgaagac |
6747767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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