View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17704_low_31 (Length: 238)
Name: NF17704_low_31
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17704_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1687376 - 1687156
Alignment:
| Q |
1 |
catttctcttattttcctttcgatgtannnnnnnattcgaggaaataatcttcttgattatagttttcatttttcggctgattgtagtagaatttccttc |
100 |
Q |
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| T |
1687376 |
catttctcttatttgcctttcgatgtatttttttatttgaggaaataatcttcttgattatagttttcatttttcggctgattgtagtagaatttccttc |
1687277 |
T |
|
| Q |
101 |
tacgtagaaatctttccaacatttcctcttcctaataaaagtttttgatctactaccctttgcaaaagggttcaagagttttaccaaatttattctttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1687276 |
tacgtagaaatctttccaacatttcctcttcctaataaaagtttttgatctactaccctttgcaaaagggttcaagagttttaccaaatttattctttct |
1687177 |
T |
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| Q |
201 |
ctttttactcttttcctctta |
221 |
Q |
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||||||||||||||||||||| |
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| T |
1687176 |
ctttttactcttttcctctta |
1687156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 217
Target Start/End: Complemental strand, 41918458 - 41918284
Alignment:
| Q |
40 |
aggaaataatcttcttgattatagttttcatttttcggctgattgtagtagaatttccttctacgtagaaatctttccaacatttcctcttcctaataaa |
139 |
Q |
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|||||||||| |||||||||| || | |||||||||||||| |||||| ||||||||||| | | || | | |||||||||| |||||| ||| ||| |
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| T |
41918458 |
aggaaataattttcttgattaaagatctcatttttcggctggttgtag---aatttccttctgcccaaaattgtgtccaacattttctcttcgtaacaaa |
41918362 |
T |
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| Q |
140 |
agtttttgatctactaccctttgcaaaagggttcaagagttttaccaaatttattctttctctttttactcttttcct |
217 |
Q |
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| T |
41918361 |
actttttgatctctggccctttgcaaacgggggcaagagttttaccaaacttattctttctcttctaactcttttcct |
41918284 |
T |
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