View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17704_low_36 (Length: 213)
Name: NF17704_low_36
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17704_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 17 - 194
Target Start/End: Complemental strand, 43587333 - 43587156
Alignment:
| Q |
17 |
taggaacataatgttggattctaatattgaactctatggaccttatgtaattatctcacctaacttaaattattttatttttaagcaataattgggtgat |
116 |
Q |
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| T |
43587333 |
taggaacataatgttggattctaatattgaactctatggaccttatgtaattatctcacctaacttaaattattttatttttaagcaataattgggtgat |
43587234 |
T |
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| Q |
117 |
atttaattattttagtgttgacttttccagggtagaattttgttaaattgtgcagggggtggaacttgtgcaacatgt |
194 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43587233 |
atttaattattttattgttgatttttccagggtagaattttgttaaattgtggagggggtggaacttgtgcaacatgt |
43587156 |
T |
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