View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17704_low_5 (Length: 586)
Name: NF17704_low_5
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17704_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 81 - 569
Target Start/End: Complemental strand, 36025702 - 36025197
Alignment:
| Q |
81 |
tgaacacactaaagcaaatctgtgtagcaaataataacttggaagttcaactctttagcgcaaccttcggggaatgacatgaagcttggcnnnnnnngat |
180 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||| |
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| T |
36025702 |
tgaacacactaaagcaaatctatgcagcaaataataacttggaagttcaactctttagcgcaacccttggggaatgacatgaagcttggcaaaaaaagat |
36025603 |
T |
|
| Q |
181 |
gacatgtgcatctgtaacgcagcttgagaagcctaagatcgaagactcggaaggatagggaagtaaacctgagaaacttgtcgataaattgatggttaaa |
280 |
Q |
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|||||||||| |||||||||| ||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36025602 |
gacatgtgcacctgtaacgcaacttgagaagccgaagatcgaagacccggaaagatagggaagtaaacctgagaaacttgtcgataaattgatgattaaa |
36025503 |
T |
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| Q |
281 |
ataaattatttagataattaagaaagttagagataaagaaaatgtcactcaagaagtagacaatacataggtagataatccccacca------------- |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36025502 |
ataaattatttagataattaagaaagttagagataaagaaaatgtcactcaagaagtagacaatacataggtagataatccccaccaacaaaacaacaaa |
36025403 |
T |
|
| Q |
368 |
----aaaacaattctaggctaggaaaaccttctgtcaaaatattggtggtggatttgttactatccatgtggtgatttaggaacagctgaagacacaatt |
463 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
36025402 |
gatgaaagcaattctaggctaggaaaaccttctgtcaaaatattggtggtggatttgttactatccatgtggtgctttaggaacagctgaagacacaatt |
36025303 |
T |
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| Q |
464 |
gtttcattgtgtgaaaaacgtgctgggaaatcacccttttatgacatgtgtgtaggcttgtctcattttccttagtcacgacttggtagcattaaccaac |
563 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36025302 |
gtttcattgtgtgaaaaacgtgctgggaaatcacccttttatgacatgtgtgtaggcttgtctcattttccttagtcacgacttggtatgattaaccaac |
36025203 |
T |
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| Q |
564 |
ggcatg |
569 |
Q |
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|||||| |
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| T |
36025202 |
ggcatg |
36025197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 46116198 - 46116234
Alignment:
| Q |
258 |
ttgtcgataaattgatggttaaaataaattatttaga |
294 |
Q |
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|||| |||| ||||||||||||||||||||||||||| |
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| T |
46116198 |
ttgtagatagattgatggttaaaataaattatttaga |
46116234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 46129332 - 46129368
Alignment:
| Q |
258 |
ttgtcgataaattgatggttaaaataaattatttaga |
294 |
Q |
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|||| |||| ||||||||||||||||||||||||||| |
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| T |
46129332 |
ttgtagatagattgatggttaaaataaattatttaga |
46129368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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