View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17704_low_7 (Length: 479)
Name: NF17704_low_7
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17704_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 13 - 462
Target Start/End: Complemental strand, 3679169 - 3678721
Alignment:
| Q |
13 |
agatgaaatattaaatgaatgaaataaatttacaatattgaaaggagaaaaatatactaaatgagacgcattgtcactataggaagaaagaaatatttca |
112 |
Q |
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| T |
3679169 |
agatgaaatattaaatgaatgaaataaatttacaatattgaaaggagaaaaatatactaaatgagacgcattgtgactatagga-gaaagaaatatttca |
3679071 |
T |
|
| Q |
113 |
actttcctcattctagaatatatgagacgcattgtcactatggtttatgaatgaatcaaagttacaataatatcttaagtgtgtatttagttagttaatt |
212 |
Q |
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| T |
3679070 |
actttcctcattctagaatatatgagacgcattgtcactatggtttatgaatgaatcaaagttacaataatatcttaagtgtgtatttagttagttaatt |
3678971 |
T |
|
| Q |
213 |
gtacactcaaatgtgtattggttggtaatttgatcaatgcatgtgtctttggttagttaatttggtacggaaagttattcacaaaataatacacagttaa |
312 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3678970 |
gtacactcaaatgtgtcttggttggtaatttgatcaatgcatgtgtctttggttagttaatttggtacggaaagttattcacaaaataatacacagttaa |
3678871 |
T |
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| Q |
313 |
aatgtttttggagttttgatacatttcaactgtcttaactcatactaatgaatgataaaattgcacaaaattagcatacaatgcaatgcaagtacatcaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3678870 |
aatgtttttggagttttgatacatttcaactgtcttaactcatactaatgaatgataaaattgcacaaaattagcatacaatgcaatgcaagtacatcaa |
3678771 |
T |
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| Q |
413 |
taatatcaccaatttcatgtatagaaatcgcagcctctccataccctatg |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3678770 |
taatatcaccaatttcatgtatagaaatcgcagcctctccataccctatg |
3678721 |
T |
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