View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17704_low_8 (Length: 441)
Name: NF17704_low_8
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17704_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 423
Target Start/End: Original strand, 28640427 - 28640854
Alignment:
| Q |
13 |
aatataccttgactaactaactatatatcaattttcttgtcnnnnnnnctactgtatatttcaacttcaaagcatggtccatattcatcgaattataaca |
112 |
Q |
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| T |
28640427 |
aatataccttgactaactaactatatatcaattttcttgtcaaaaaaactactgtatatttcaacttcaaagcatggtccatattcatcgaattataaca |
28640526 |
T |
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| Q |
113 |
tatccatttttagtttagtgagatctaaagaaaatttcgtcacgtcttta---ggataagatagccaactaagtcacaataatacactagaaacagaaat |
209 |
Q |
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| T |
28640527 |
tatccatttttagtttagtg---tctaaagaaaatttcgtcacgtctttattaggataagatagccaactaagtcacaataatacactagaaacagaaat |
28640623 |
T |
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| Q |
210 |
aaaatattgacatagagaacatgattgacgtattcacaaacaattagaaaatattagaaataaaaagtcaaatgtggaaaatttatattat--------- |
300 |
Q |
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| T |
28640624 |
taaatattgacatagagaacatgattgacgtattcacaaacaattagaaaatattagaaataaaaagtcaaatgtggaaaatttatattataattactat |
28640723 |
T |
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| Q |
301 |
--------aattacgaaacttgagagaaaatgctgaaatataaaattaatctgtattccgtctgtttcgcacaatgattaccaaaattatatacaatttt |
392 |
Q |
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| T |
28640724 |
aaataaaaaattacgaaacttgagagaaaatgctgaaatataaaattaatctgtattccgtctgtttcgcacaatgattaccaaaattatatacaatttt |
28640823 |
T |
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| Q |
393 |
catttcataaatttaccaaaatcatatacat |
423 |
Q |
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| T |
28640824 |
catttcataaacttaccaaaatcatatacat |
28640854 |
T |
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