View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17704_low_9 (Length: 418)

Name: NF17704_low_9
Description: NF17704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17704_low_9
NF17704_low_9
[»] chr2 (9 HSPs)
chr2 (226-412)||(17417797-17417984)
chr2 (238-393)||(19564224-19564383)
chr2 (1-140)||(22311438-22311577)
chr2 (26-143)||(19564756-19564873)
chr2 (8-145)||(17417322-17417459)
chr2 (19-143)||(24764375-24764498)
chr2 (331-392)||(22132695-22132759)
chr2 (34-165)||(25916486-25916617)
chr2 (331-363)||(26653808-26653840)
[»] chr4 (3 HSPs)
chr4 (164-393)||(21588576-21588808)
chr4 (291-393)||(22223153-22223258)
chr4 (33-143)||(22222593-22222703)
[»] chr5 (3 HSPs)
chr5 (1-165)||(6998776-6998940)
chr5 (331-392)||(24885673-24885737)
chr5 (331-393)||(18303986-18304050)
[»] chr1 (2 HSPs)
chr1 (286-393)||(37283746-37283854)
chr1 (33-145)||(37283212-37283324)
[»] chr6 (5 HSPs)
chr6 (1-162)||(14271918-14272079)
chr6 (226-335)||(14271468-14271578)
chr6 (106-158)||(18615190-18615242)
chr6 (338-391)||(14270136-14270189)
chr6 (331-393)||(19731083-19731147)
[»] chr3 (5 HSPs)
chr3 (339-413)||(16201566-16201640)
chr3 (226-296)||(16199387-16199458)
chr3 (43-145)||(16198932-16199034)
chr3 (33-97)||(27485839-27485903)
chr3 (33-141)||(46349080-46349188)
[»] chr7 (4 HSPs)
chr7 (332-393)||(2642137-2642200)
chr7 (79-165)||(5992776-5992862)
chr7 (332-393)||(19414282-19414346)
chr7 (87-165)||(22975363-22975441)
[»] scaffold0062 (1 HSPs)
scaffold0062 (331-365)||(1321-1355)
[»] scaffold0032 (1 HSPs)
scaffold0032 (331-392)||(78939-79003)


Alignment Details
Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 226 - 412
Target Start/End: Original strand, 17417797 - 17417984
Alignment:
Q  226 agtttgttcactttgttcagtttacactataaatttttaaatttggtgtaggaacaagttt-tttatatttgctgtaaacaaacataagactcttccttg 324  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||| ||| ||||||||||||| |||||||||||| |||||||||| |||  |||| | |     
T  17417797 agtttgttcactttgttcagtctacacgataaattgttaaattaggtataggaacaagtttgtttatatttgctttaaacaaacagaagtatcttgcctt 17417896  T
Q  325 ttaagtttgagcatataagcctcttggtgaaaccttgagcatcaaagtctcaatcagttgtgattgagctccataagtcttaatcagt 412  Q
    ||||| |||||| ||||||||||||||||||||||||||||  |||||||||||| ||||||||||||| ||| ||||||||||||||    
T  17417897 ttaagcttgagcgtataagcctcttggtgaaaccttgagcactaaagtctcaatctgttgtgattgagcaccagaagtcttaatcagt 17417984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 238 - 393
Target Start/End: Complemental strand, 19564383 - 19564224
Alignment:
Q  238 ttgttcagtttacacta-taaatttttaaatttggtgtaggaacaagttt-tttatatttgctgtaaacaaacataagactcttccttgttaagtttgag 335  Q
    ||||||||||||||| | ||||||| || || ||||||| |||  ||||| |||||||||| |||||||||||| ||| ||||| ||||| ||| |||||    
T  19564383 ttgttcagtttacaccaataaatttgtatatctggtgtaagaaatagtttatttatatttgttgtaaacaaacagaagtctcttgcttgtgaagcttgag 19564284  T
Q  336 c-atataagcctcttggtgaaaccttgagca-tcaaagtctcaatcagttgtgattgagc 393  Q
    | | ||||| |||||||||||| |||||||| |  |||||||||||||||||||||||||    
T  19564283 caacataagtctcttggtgaaatcttgagcactagaagtctcaatcagttgtgattgagc 19564224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 22311438 - 22311577
Alignment:
Q  1 tcatcacactcagaagtactagcaggacacataagaccccatcagactcgaaagaccgttagactacataagcacctaagggatctagactccacgttaa 100  Q
    |||||| |||||||||   ||||  ||||||||||||||||||||||| | |||| | | ||||| ||||||||||| ||||||| ||||||||| | |     
T  22311438 tcatcagactcagaagacatagccagacacataagaccccatcagacttggaagaacttcagacttcataagcacctgagggatccagactccacatcag 22311537  T
Q  101 ctttatcgtcttctttagttgtccacatcaaaggatctga 140  Q
     ||| ||||||| | ||  |||||||||||||| ||||||    
T  22311538 atttgtcgtcttatatatatgtccacatcaaagaatctga 22311577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 143
Target Start/End: Complemental strand, 19564873 - 19564756
Alignment:
Q  26 gacacataagaccccatcagactcgaaagaccgttagactacataagcacctaagggatctagactccacgttaactttatcgtcttctttagttgtcca 125  Q
    |||||| |||||||||||| ||  | |||||  | ||||| || ||||||||||| || ||||||||||||| |  ||| ||||||||| | | ||||||    
T  19564873 gacacagaagaccccatcaaacctggaagacattcagacttcagaagcacctaagtgacctagactccacgtcatatttttcgtcttctatggatgtcca 19564774  T
Q  126 catcaaaggatctgagca 143  Q
    ||||||||||||||||||    
T  19564773 catcaaaggatctgagca 19564756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 17417322 - 17417459
Alignment:
Q  8 actcagaagtactagcaggacacataagaccccatcagactcgaaagaccgttagactacataagcacctaagggatctagactccacgttaactttatc 107  Q
    ||||| |||||||||||||| | | |||||||||||||||||| |||||| | | ||| || |||||  | | ||| | |||||||| || | |||| ||    
T  17417322 actcaaaagtactagcaggatatagaagaccccatcagactcggaagaccttcatactgcaaaagcatttgaaggacccagactccatgtcagctttgtc 17417421  T
Q  108 gtcttctttagttgtccacatcaaaggatctgagcata 145  Q
    ||||||| ||| | ||||||||||| ||| ||||||||    
T  17417422 gtcttctgtagctatccacatcaaatgatttgagcata 17417459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 24764375 - 24764498
Alignment:
Q  19 ctagcaggacacataagaccccatcagactcgaaagaccgttagactacataagcacctaagggatctagactccacgttaactttatcgtcttctttag 118  Q
    ||||| || ||||||||||||||||||||| |||||||| | | ||| ||||||||||| ||||| | | ||||||||| |  ||| ||||||||| ||     
T  24764375 ctagcggggcacataagaccccatcagacttgaaagaccttcaaacttcataagcacctgagggacccaaactccacgtcagatttgtcgtcttctgtaa 24764474  T
Q  119 ttgtccacatcaaaggatctgagca 143  Q
     ||| || |||||||||| ||||||    
T  24764475 ctgt-catatcaaaggatttgagca 24764498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 392
Target Start/End: Original strand, 22132695 - 22132759
Alignment:
Q  331 ttgagcatataagcctcttggtgaaaccttgagcat---caaagtctcaatcagttgtgattgag 392  Q
    ||||||||||||| ||||||||||||||||||||||     ||||||||||||||| ||||||||    
T  22132695 ttgagcatataagtctcttggtgaaaccttgagcatttaggaagtctcaatcagttttgattgag 22132759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 34 - 165
Target Start/End: Original strand, 25916486 - 25916617
Alignment:
Q  34 agaccccatcagactcgaaagaccgttagactacataagcacctaagggatctagactccacgttaactttatcgtcttctttagttgtccacatcaaag 133  Q
    |||||||||| |||| | |||||| | | ||| ||||||||| | | ||| | ||||||||| | |  ||| ||||||||| ||| |||||||| |||||    
T  25916486 agaccccatctgacttggaagaccttcatacttcataagcacttgaaggacccagactccacatgagatttgtcgtcttctgtagctgtccacaacaaag 25916585  T
Q  134 gatctgagcataactttatcttcttctaacca 165  Q
    |||||||||| |  ||| ||||||||| ||||    
T  25916586 gatctgagcacagttttgtcttcttctgacca 25916617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 363
Target Start/End: Original strand, 26653808 - 26653840
Alignment:
Q  331 ttgagcatataagcctcttggtgaaaccttgag 363  Q
    ||||||||||||| |||||||||||||||||||    
T  26653808 ttgagcatataagtctcttggtgaaaccttgag 26653840  T

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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 164 - 393
Target Start/End: Original strand, 21588576 - 21588808
Alignment:
Q  164 catatacacttaggattttcgtattgactttagtaatcatagaaatcctaaaaattgtaaacagtttgttcactttgttcagtttacactataaattttt 263  Q
    ||||||||||| |||||||||| |  || || |||||| |||||||||||||| ||||| | ||| |||| |||||||||| ||||||| ||   || ||    
T  21588576 catatacactttggattttcgtttcaacatttgtaatcttagaaatcctaaaagttgtatagagtctgtttactttgttcaatttacaccatcttttgtt 21588675  T
Q  264 aaatttggtgtaggaacaagttt-tttatatttgctgtaaacaaacataagactcttccttgttaagtttgagc-atataagcctcttggtgaaaccttg 361  Q
    ||||  | |||| |||||||||| ||| |||||| |||||||||||||||| ||||| ||||| ||| |||||| ||||||  |||||| ||||||||||    
T  21588676 aaatccgatgtaagaacaagtttgtttttatttgttgtaaacaaacataagtctcttgcttgtgaagcttgagcaatataaatctcttgttgaaaccttg 21588775  T
Q  362 agcatc-aaagtctcaatcagttgtgattgagc 393  Q
    |||| | ||||||||| ||||||||| ||||||    
T  21588776 agcaccaaaagtctcattcagttgtgtttgagc 21588808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 291 - 393
Target Start/End: Original strand, 22223153 - 22223258
Alignment:
Q  291 tatttgctgtaaacaaac-ataagactcttccttgttaagtttgagcat-ataagcctcttggtgaaaccttgagcatca-aagtctcaatcagttgtga 387  Q
    |||||||||||||||||| | ||  ||||| ||||| ||| |||||||| |||||  |||||||||||| ||||||| || |||||| | ||||||||||    
T  22223153 tatttgctgtaaacaaacaagaattctcttgcttgtgaagcttgagcatcataagtttcttggtgaaactttgagcaccagaagtcttagtcagttgtga 22223252  T
Q  388 ttgagc 393  Q
    ||||||    
T  22223253 ttgagc 22223258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 143
Target Start/End: Original strand, 22222593 - 22222703
Alignment:
Q  33 aagaccccatcagactcgaaagaccgttagactacataagcacctaagggatctagactccacgttaactttatcgtcttctttagttgtccacatcaaa 132  Q
    |||| |||||||||||   |||||| | ||||| ||||||||  | |||||   ||||||||||| |  ||| | ||||| | |||||||||||||||||    
T  22222593 aagaacccatcagacttagaagaccttcagacttcataagcatatgagggactcagactccacgtcagatttgttgtcttttgtagttgtccacatcaaa 22222692  T
Q  133 ggatctgagca 143  Q
    |||||||||||    
T  22222693 ggatctgagca 22222703  T

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Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 6998776 - 6998940
Alignment:
Q  1 tcatcacactcagaagtactagcaggacacataagaccccatcagactcgaaagaccgttagactacataagcacctaagggatctagactccacgttaa 100  Q
    |||||| |||||||||  ||||||||||||||||||| || ||||||| | |||| | | | ||| || |||||||| |||||  |||||||||||| ||    
T  6998776 tcatcagactcagaagacctagcaggacacataagacaccttcagacttggaagatcttcaaacttcagaagcacctgagggacttagactccacgtcaa 6998875  T
Q  101 ctttatcgtcttctttagttgtccacatcaaaggatctgagcataactttatcttcttctaacca 165  Q
    |||||||||||| | ||||||||||||| ||||||| ||||||||| ||| ||||||||| ||||    
T  6998876 ctttatcgtcttttgtagttgtccacattaaaggatatgagcataattttgtcttcttctgacca 6998940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 392
Target Start/End: Original strand, 24885673 - 24885737
Alignment:
Q  331 ttgagcatataagcctcttggtgaaaccttgagcatc---aaagtctcaatcagttgtgattgag 392  Q
    ||||||||||||| | |||||||||||||||||||||    || ||||| |||||||||||||||    
T  24885673 ttgagcatataagtcccttggtgaaaccttgagcatctaggaaatctcagtcagttgtgattgag 24885737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 393
Target Start/End: Complemental strand, 18304050 - 18303986
Alignment:
Q  331 ttgagcatataagcctcttggtgaaaccttgagcatcaa--agtctcaatcagttgtgattgagc 393  Q
    ||||| ||||||  ||||||||||||||||||||| | |  |||||||||||||||| |||||||    
T  18304050 ttgagtatataactctcttggtgaaaccttgagcacctaggagtctcaatcagttgtaattgagc 18303986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 286 - 393
Target Start/End: Original strand, 37283746 - 37283854
Alignment:
Q  286 ttttatatttgctgtaaacaaacataagactcttccttgttaagtttgagcat-ataagcctcttggtgaaaccttgagcatcaaagtctcaatcagttg 384  Q
    ||||||||||||||||||||||||||||  |||| ||||| ||| |||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  37283746 ttttatatttgctgtaaacaaacataagtatcttgcttgtgaagcttgagcatcataagtctcttggtgaaactttgagcatcaaagtctcaatcagttg 37283845  T
Q  385 tgattgagc 393  Q
     ||||||||    
T  37283846 cgattgagc 37283854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 37283212 - 37283324
Alignment:
Q  33 aagaccccatcagactcgaaagaccgttagactacataagcacctaagggatctagactccacgttaactttatcgtcttctttagttgtccacatcaaa 132  Q
    |||||||||||||||| | |||| | || |||| || |||| ||| ||||| | ||||||||||| |  ||| | ||||| |  || |||||||||||||    
T  37283212 aagaccccatcagacttggaagatcttttgacttcagaagctcctgagggacccagactccacgtcagttttgttgtcttttgcagatgtccacatcaaa 37283311  T
Q  133 ggatctgagcata 145  Q
    | |||||||||||    
T  37283312 gaatctgagcata 37283324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 14272079 - 14271918
Alignment:
Q  1 tcatcacactcagaagtactagcaggacacataagaccccatcagactcgaaagaccgttagactacataagcacctaagggatctagactccacgttaa 100  Q
    |||||| |||||||||||||| ||||||||| |||||||||| ||||| | |||||| | ||||| || |||||| | ||||| |||||||||| || |     
T  14272079 tcatcagactcagaagtactaccaggacacagaagaccccattagacttggaagaccttcagactccagaagcacttgagggacctagactccatgtcag 14271980  T
Q  101 ctttatcgtcttctttagttgtccacatcaaaggatctgagcataactttatcttcttctaa 162  Q
    |||| ||||||||| |||||||| |||||||||||||  ||||||  ||| ||| |||||||    
T  14271979 ctttgtcgtcttctgtagttgtctacatcaaaggatcaaagcatagttttgtctccttctaa 14271918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 226 - 335
Target Start/End: Complemental strand, 14271578 - 14271468
Alignment:
Q  226 agtttgttcactttgttcagtttacactataaatttttaaatttggtgtaggaacaagttt-tttatatttgctgtaaacaaacataagactcttccttg 324  Q
    ||||||||||  |||||| || ||||| ||||||| |||||| |||||||||||||||||| || ||||||  |||||||||||||||| ||||| ||||    
T  14271578 agtttgttcatattgttctgtctacaccataaattattaaatctggtgtaggaacaagtttgttgatatttcgtgtaaacaaacataagtctcttgcttg 14271479  T
Q  325 ttaagtttgag 335  Q
    ||||| |||||    
T  14271478 ttaagcttgag 14271468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 18615190 - 18615242
Alignment:
Q  106 tcgtcttctttagttgtccacatcaaaggatctgagcataactttatcttctt 158  Q
    ||||||||| ||||||||||||||||||||||||||||||  ||| |||||||    
T  18615190 tcgtcttctatagttgtccacatcaaaggatctgagcatagttttgtcttctt 18615242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 14270189 - 14270136
Alignment:
Q  338 tataagcctcttggtgaaaccttgagcatcaaagtctcaatcagttgtgattga 391  Q
    |||||| ||||||||||||||||||||| |||| ||| |||  |||||||||||    
T  14270189 tataagtctcttggtgaaaccttgagcaccaaaatcttaatttgttgtgattga 14270136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 393
Target Start/End: Complemental strand, 19731147 - 19731083
Alignment:
Q  331 ttgagcatataagcctcttggtgaaaccttgagcatcaa--agtctcaatcagttgtgattgagc 393  Q
    ||||||||||||  |||||||||||| |||||||||| |  ||||| |||| |||||||||||||    
T  19731147 ttgagcatataactctcttggtgaaaacttgagcatctatcagtctgaatccgttgtgattgagc 19731083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 339 - 413
Target Start/End: Original strand, 16201566 - 16201640
Alignment:
Q  339 ataagcctcttggtgaaaccttgagcatcaaagtctcaatcagttgtgattgagctccataagtcttaatcagtt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||  || |||| ||||||||||    
T  16201566 ataagcctcttggtgaaaccttgagcatcaaagtctcaatcagttttgattgggcaacagaagttttaatcagtt 16201640  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 296
Target Start/End: Original strand, 16199387 - 16199458
Alignment:
Q  226 agtttgttcactttgttcagtttacactataaatttttaaatttggtgtaggaacaagttt-tttatatttg 296  Q
    |||||||||||||||||| || ||||| ||||||| |||||| | |||||| ||||||||| ||||||||||    
T  16199387 agtttgttcactttgttcggtctacaccataaattgttaaatcttgtgtagaaacaagtttgtttatatttg 16199458  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 145
Target Start/End: Original strand, 16198932 - 16199034
Alignment:
Q  43 cagactcgaaagaccgttagactacataagcacctaagggatctagactccacgttaactttatcgtcttctttagttgtccacatcaaaggatctgagc 142  Q
    ||||||||||||||| | ||||| || |||||||||||||| | | ||||||||| | | || | || || | ||||||||||||| || ||||||||||    
T  16198932 cagactcgaaagaccttcagactgcagaagcacctaagggacccatactccacgtcatccttgttgtattgtatagttgtccacattaacggatctgagc 16199031  T
Q  143 ata 145  Q
    |||    
T  16199032 ata 16199034  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 27485839 - 27485903
Alignment:
Q  33 aagaccccatcagactcgaaagaccgttagactacataagcacctaagggatctagactccacgt 97  Q
    |||||||||||||||| |||||||| | ||||| || ||| |||||||| | | |||||||||||    
T  27485839 aagaccccatcagacttgaaagaccttcagacttcagaagaacctaaggaacccagactccacgt 27485903  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 141
Target Start/End: Complemental strand, 46349188 - 46349080
Alignment:
Q  33 aagaccccatcagactcgaaagaccgttagactacataagcacctaagggatctagactccacgttaactttatcgtcttctttagttgtccacatcaaa 132  Q
    ||||||||||||| || | |||||| | ||||| |||||| |||| | ||| | ||| ||||||| || ||| || |||||| ||||||||  |||||||    
T  46349188 aagaccccatcagtcttggaagaccttcagacttcataagaacctgaaggaccaagaatccacgtcaaatttgtcatcttctatagttgtctccatcaaa 46349089  T
Q  133 ggatctgag 141  Q
    ||| |||||    
T  46349088 ggacctgag 46349080  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 393
Target Start/End: Original strand, 2642137 - 2642200
Alignment:
Q  332 tgagcatataagcctcttggtgaaaccttgagcatcaa--agtctcaatcagttgtgattgagc 393  Q
    |||||||||||| ||||||||||||||||||||| | |  ||||||||||||||| ||||||||    
T  2642137 tgagcatataagtctcttggtgaaaccttgagcacctaggagtctcaatcagttgcgattgagc 2642200  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 165
Target Start/End: Original strand, 5992776 - 5992862
Alignment:
Q  79 agggatctagactccacgttaactttatcgtcttctttagttgtccacatcaaaggatctgagcataactttatcttcttctaacca 165  Q
    ||||||| | ||| |||||||  ||| ||||||||| ||| | |||| ||||||||||||||||| || ||| ||||||||||||||    
T  5992776 agggatccatacttcacgttagttttgtcgtcttctgtagctatccatatcaaaggatctgagcacaattttgtcttcttctaacca 5992862  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 393
Target Start/End: Complemental strand, 19414346 - 19414282
Alignment:
Q  332 tgagcatataagcctcttggtgaaaccttgagcatc---aaagtctcaatcagttgtgattgagc 393  Q
    |||||||||||| ||||||||||||||||||||| |    |||||||| ||||||||||||||||    
T  19414346 tgagcatataagtctcttggtgaaaccttgagcacctaggaagtctcagtcagttgtgattgagc 19414282  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 165
Target Start/End: Complemental strand, 22975441 - 22975363
Alignment:
Q  87 agactccacgttaactttatcgtcttctttagttgtccacatcaaaggatctgagcataactttatcttcttctaacca 165  Q
    ||||||||||| |  ||| ||||||||| ||| ||||||||||||| ||||| |||||   ||||||||||||||||||    
T  22975441 agactccacgtcagatttttcgtcttctatagctgtccacatcaaatgatctaagcattgttttatcttcttctaacca 22975363  T

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Target: scaffold0062 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 365
Target Start/End: Complemental strand, 1355 - 1321
Alignment:
Q  331 ttgagcatataagcctcttggtgaaaccttgagca 365  Q
    ||||||||||||| |||||||||||||||||||||    
T  1355 ttgagcatataagtctcttggtgaaaccttgagca 1321  T

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Target: scaffold0032 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 392
Target Start/End: Complemental strand, 79003 - 78939
Alignment:
Q  331 ttgagcatataagcctcttggtgaaaccttgagcatc---aaagtctcaatcagttgtgattgag 392  Q
    ||||||||||||| ||||||||||||||||||||  |    |||||||| |||||||||||||||    
T  79003 ttgagcatataagtctcttggtgaaaccttgagcccctaggaagtctcagtcagttgtgattgag 78939  T

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