View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17705_high_11 (Length: 343)

Name: NF17705_high_11
Description: NF17705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17705_high_11
NF17705_high_11
[»] chr3 (14 HSPs)
chr3 (11-343)||(22367524-22367856)
chr3 (11-341)||(22430772-22431102)
chr3 (13-343)||(22436231-22436561)
chr3 (13-323)||(22442362-22442672)
chr3 (11-320)||(22357625-22357931)
chr3 (16-340)||(22635109-22635430)
chr3 (11-324)||(22630060-22630370)
chr3 (25-323)||(22353432-22353728)
chr3 (11-343)||(22467551-22467880)
chr3 (11-322)||(22458110-22458418)
chr3 (11-322)||(22481091-22481399)
chr3 (230-331)||(22620496-22620597)
chr3 (24-95)||(22620756-22620827)
chr3 (294-331)||(22656666-22656703)


Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 22367856 - 22367524
Alignment:
11 agaaaatcttatagatatatcttccaaaattgttgaaaaatgcaatggattaccactcgcaattgtagtcattggtggtattttagcttgcaaagatagg 110  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22367856 agaaaatcttattgatatatcttccaaaattgttgaaaaatgcaatggattaccactcgcaattgtagtcattggtggtattttagcttgcaaagatagg 22367757  T
111 aatccaattgaatggtctaagtttagtgaaaatataaatgcagatctgtcaaaggaatattccatgatnnnnnnnnttctaggacttagttaccatgatt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||        ||||||||||||||||||||||||    
22367756 aatccaattgaatggtctaagtttagtgaaaatataaatgcagatcagtcaaaggaatattccatgataaaaaaaattctaggacttagttaccatgatt 22367657  T
211 tgccttgcaacctcaagtaatgtttcttgtattttggattatatcctgaagactctaatgttcgttcaaatatattgactcatcaatggattgctgaagg 310  Q
    |||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
22367656 tgccttgcaacctcaagtcatgtttcttgtactttggattatatcctgaagactcaaatgttcgttcaaatatattgactcgtcaatggattgctgaagg 22367557  T
311 gtttgtgaaagaagaaaggggaatgacattgga 343  Q
    |||||||||||||||||||||||||||||||||    
22367556 gtttgtgaaagaagaaaggggaatgacattgga 22367524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 11 - 341
Target Start/End: Complemental strand, 22431102 - 22430772
Alignment:
11 agaaaatcttatagatatatcttccaaaattgttgaaaaatgcaatggattaccactcgcaattgtagtcattggtggtattttagcttgcaaagatagg 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22431102 agaaaatcttatagatatatcttccaaaattgttgaaaaatgcaatggattaccactcgcaattgtagtcattggtggtattttagcttgcaaagatagg 22431003  T
111 aatccaattgaatggtctaagtttagtgaaaatataaatgcagatctgtcaaaggaatattccatgatnnnnnnnnttctaggacttagttaccatgatt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| || |  ||||         | |||||||||||||||||||||    
22431002 aatccaattgaatggtctaagtttagtgaaaatataaatgcagatcaggcaaatgaaaatcctgtgataagaaaaactttaggacttagttaccatgatt 22430903  T
211 tgccttgcaacctcaagtaatgtttcttgtattttggattatatcctgaagactctaatgttcgttcaaatatattgactcatcaatggattgctgaagg 310  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||  |||  |||||| | ||| |||  ||||||||||||||||||    
22430902 tgccttgcaacctcaagtcatgtttcttgtattttggattatatcctaaagactatatagtttattcaaagacattaacttgtcaatggattgctgaagg 22430803  T
311 gtttgtgaaagaagaaaggggaatgacattg 341  Q
    ||||||||||||| ||| ||||| |||||||    
22430802 gtttgtgaaagaaaaaacgggaaggacattg 22430772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 13 - 343
Target Start/End: Complemental strand, 22436561 - 22436231
Alignment:
13 aaaatcttatagatatatcttccaaaattgttgaaaaatgcaatggattaccactcgcaattgtagtcattggtggtattttagcttgcaaagataggaa 112  Q
    |||||||||| ||||||||||||||||||||| |||||||||| |||||||| || ||||||||||||| ||||||| ||||| ||||||||||||| ||    
22436561 aaaatcttattgatatatcttccaaaattgttaaaaaatgcaaaggattacctctagcaattgtagtcactggtggtcttttatcttgcaaagatagaaa 22436462  T
113 tccaattgaatggtctaagtttagtgaaaatataaatgcagatctgtcaaaggaatattccatgatnnnnnnnnttctaggacttagttaccatgatttg 212  Q
    ||| | ||||||||  |||||||||||||||||||||||||||| |||||| ||||||||||| ||        |||||||| |||||||||||||||||    
22436461 tcctactgaatggtacaagtttagtgaaaatataaatgcagatcagtcaaatgaatattccataataagaaaaattctaggatttagttaccatgatttg 22436362  T
213 ccttgcaacctcaagtaatgtttcttgtattttggattatatcctgaagactctaatgttcgttcaaatatattgactcatcaatggattgctgaagggt 312  Q
    |||| | |||||||||  |||||||||||||||||||||||||||||||||| ||  ||||||||||| | ||||||||  |||||||||||||||||||    
22436361 ccttactacctcaagtcgtgtttcttgtattttggattatatcctgaagactatatagttcgttcaaaaacattgactcgccaatggattgctgaagggt 22436262  T
313 ttgtgaaagaagaaaggggaatgacattgga 343  Q
    | ||||||||||| ||||||| |||||||||    
22436261 tcgtgaaagaagagaggggaaggacattgga 22436231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 13 - 323
Target Start/End: Complemental strand, 22442672 - 22442362
Alignment:
13 aaaatcttatagatatatcttccaaaattgttgaaaaatgcaatggattaccactcgcaattgtagtcattggtggtattttagcttgcaaagataggaa 112  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||| ||    
22442672 aaaatcttattggtatatcttccaaaattgttgaaaaatgcaatggattaccactagcaattgtagtcattggtggtattttagctcccaaagatagaaa 22442573  T
113 tccaattgaatggtctaagtttagtgaaaatataaatgcagatctgtcaaaggaatattccatgatnnnnnnnnttctaggacttagttaccatgatttg 212  Q
    | |||||||||||| | |||||| |||||||||||||||||||| ||  ||||||||||||||  |        || ||||||| |||||||||||||||    
22442572 tacaattgaatggtatgagtttaatgaaaatataaatgcagatcagtttaaggaatattccatagtaagaaaaattttaggactcagttaccatgatttg 22442473  T
213 ccttgcaacctcaagtaatgtttcttgtattttggattatatcctgaagactctaatgttcgttcaaatatattgactcatcaatggattgctgaagggt 312  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||| | | | | ||||||| | |||||||| ||||||||| ||||||||||    
22442472 ccttgcaacctcaagtcatgtttcttgtattttggattatatcccgaagactatgaagcttgttcaaagacattgactcgtcaatggatagctgaagggt 22442373  T
313 ttgtgaaagaa 323  Q
    |||||||||||    
22442372 ttgtgaaagaa 22442362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 11 - 320
Target Start/End: Complemental strand, 22357931 - 22357625
Alignment:
11 agaaaatcttatagatatatcttccaaaattgttgaaaaatgcaatggattaccactcgcaattgtagtcattggtggtattttagcttgcaaagatagg 110  Q
    |||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||  ||||||||      
22357931 agaaaatcttattgatatatcttccaaaattgttaaaaaatgcaaaggattaccactagcaattgtagtcattggtggtattttagctcccaaagataaa 22357832  T
111 aatccaattgaatggtctaagtttagtgaaaatataaatgcagatctgtcaaaggaatattccatgatnnnnnnnnttctaggacttagttaccatgatt 210  Q
    | |||||| ||||||| |||||||||||||||||||||||||||   || | ||||||||||||| ||        || ||||| |||||||||||||||    
22357831 attccaatggaatggtataagtttagtgaaaatataaatgcaga---gttagaggaatattccataataagaaaaattttaggatttagttaccatgatt 22357735  T
211 tgccttgcaacctcaagtaatgtttcttgtattttggattatatcctgaagactctaatgttcgttcaaatatattgactcatcaatggattgctgaagg 310  Q
    |||||| | ||||||||| ||||||||||||||||||||||||||||||||||| ||| |||| |||||| | ||||||||  |||||||||||||||||    
22357734 tgccttactacctcaagtcatgtttcttgtattttggattatatcctgaagactataaagttcattcaaagacattgactcgacaatggattgctgaagg 22357635  T
311 gtttgtgaaa 320  Q
    ||||||||||    
22357634 gtttgtgaaa 22357625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 16 - 340
Target Start/End: Complemental strand, 22635430 - 22635109
Alignment:
16 atcttatagatatatcttccaaaattgttgaaaaatgcaatggattaccactcgcaattgtagtcattggtggtattttagcttgcaaagataggaatcc 115  Q
    ||||||| |||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||||||||| |||| || || |||  ||||| ||| |    
22635430 atcttattgatatatcttccaaaattgtcgaaaaatgcaaaggattacctctagcaattgtagtcattggtgatattctatctcgcacggatagaaattc 22635331  T
116 aattgaatggtctaagtttagtgaaaatataaatgcagatctgtcaaaggaatattccatgatnnnnnnnnttctaggacttagttaccatgatttgcct 215  Q
    ||| |||||||| ||||||||||||||||||||||||||   || | ||||||||||||||||        || |||||||||||||||||||||||||     
22635330 aatagaatggtcgaagtttagtgaaaatataaatgcaga---gttagaggaatattccatgataagaaaaattttaggacttagttaccatgatttgcca 22635234  T
216 tgcaacctcaagtaatgtttcttgtattttggattatatcctgaagactctaatgttcgttcaaatatattgactcatcaatggattgctgaagggtttg 315  Q
    ||| ||||||||| ||||||||||||||||||||||||||||||||||| ||  ||||||||||| | ||||||||  |||||||||||||||||||| |    
22635233 tgctacctcaagtcatgtttcttgtattttggattatatcctgaagactatatagttcgttcaaaaacattgactcgccaatggattgctgaagggttcg 22635134  T
316 tgaaagaagaaaggggaatgacatt 340  Q
    |||||||||| ||||||| ||||||    
22635133 tgaaagaagacaggggaaggacatt 22635109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 11 - 324
Target Start/End: Complemental strand, 22630370 - 22630060
Alignment:
11 agaaaatcttatagatatatcttccaaaattgttgaaaaatgcaatggattaccactcgcaattgtagtcattggtggtattttagcttgcaaagatagg 110  Q
    |||||||||| | || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||  |||| ||||||| || |||||| |||     
22630370 agaaaatctttttgacatatcttccaaaattgttgaaaaatgcaaaggattacctctagcaattgtagtcaccggtgatattttatctcgcaaagttaga 22630271  T
111 aatccaattgaatggtctaagtttagtgaaaatataaatgcagatctgtcaaaggaatattccatgatnnnnnnnnttctaggacttagttaccatgatt 210  Q
    |||||||||||||||||||||||||||||||||||||||| |||   || | ||||||||||||  ||         | ||||| |||||||||||||||    
22630270 aatccaattgaatggtctaagtttagtgaaaatataaatgtaga---gttagaggaatattccacaataagaaaaaatttaggatttagttaccatgatt 22630174  T
211 tgccttgcaacctcaagtaatgtttcttgtattttggattatatcctgaagactctaatgttcgttcaaatatattgactcatcaatggattgctgaagg 310  Q
    | |||| ||||||||||| ||||||||||||||||||||| ||||||||||||| ||  |||||||||||  | |||||||  |||||||| ||||||||    
22630173 taccttacaacctcaagtcatgtttcttgtattttggattctatcctgaagactatatagttcgttcaaaggtgttgactcgccaatggatcgctgaagg 22630074  T
311 gtttgtgaaagaag 324  Q
    ||||||||||||||    
22630073 gtttgtgaaagaag 22630060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 25 - 323
Target Start/End: Complemental strand, 22353728 - 22353432
Alignment:
25 atatatcttccaaaattgttgaaaaatgcaatggattaccactcgcaattgtagtcattggtggtattttagcttgcaaagataggaatccaattgaatg 124  Q
    ||||||||||| ||||| ||||||||||||| |||||||| ||||||||||||||||| |||  ||||||| || |||||||||| ||||||||||||||    
22353728 atatatcttccgaaattattgaaaaatgcaaaggattacctctcgcaattgtagtcataggtaatattttatctcgcaaagatagaaatccaattgaatg 22353629  T
125 gtctaagtttagtgaaaatataaatgcagatctgtcaaaggaatattccatgatnnnnnnnnttctaggacttagttaccatgatttgcc-ttgcaacct 223  Q
    ||||||||||||||||||||||||||||||   || | ||||||||||||| ||        || ||||| ||||||||||||||||||| || | ||||    
22353628 gtctaagtttagtgaaaatataaatgcaga---gttagaggaatattccataataagaaaaattttaggatttagttaccatgatttgcctttactacct 22353532  T
224 caagtaatgtttcttgtattttggattatatcctgaagactctaatgttcgttcaaatatattgactcatcaatggattgctgaagggtttgtgaaagaa 323  Q
    ||||| ||||||||||||||||||||||||||  |||||||   | |||  |||| ||| |||||||| ||||||||||||||| |||||||||||||||    
22353531 caagtcatgtttcttgtattttggattatatctcgaagactacgaagtttattcagatacattgactcgtcaatggattgctgaggggtttgtgaaagaa 22353432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 22467880 - 22467551
Alignment:
11 agaaaatcttatagatatatcttccaaaattgttgaaaaatgcaatggattaccactcgcaattgtagtcattggtggtattttagcttgcaaagatagg 110  Q
    |||||||||| | || ||||||||||||||||||||||| ||||| |||||||| || |||||||| ||||  |||| ||||||| || ||||| ||||     
22467880 agaaaatctttttgacatatcttccaaaattgttgaaaactgcaaaggattacctctagcaattgttgtcaccggtgatattttatctcgcaaaaataga 22467781  T
111 aatccaattgaatggtctaagtttagtgaaaatataaatgcagatctgtcaaaggaatattccatgatnnnnnnnnttctaggacttagttaccatgatt 210  Q
    |||||||||||||||||||| ||||||||||||||||||| |||   || | ||| ||||||||  ||        || ||||| ||||||||||| |||    
22467780 aatccaattgaatggtctaaatttagtgaaaatataaatgtaga---gttagagggatattccacaataagaaaaattttaggatttagttaccataatt 22467684  T
211 tgccttgcaacctcaagtaatgtttcttgtattttggattatatcctgaagactctaatgttcgttcaaatatattgactcatcaatggattgctgaagg 310  Q
    | |||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||  |||| |||||| |  |||||||  |||||||||||||||||    
22467683 taccttacaacctcaagtcatgtttcttgtattttggattatatcctgaagactatatagttcattcaaagacgttgactcgccaatggattgctgaagg 22467584  T
311 gtttgtgaaagaagaaaggggaatgacattgga 343  Q
    ||||||||| ||||| ||||| | |||||||||    
22467583 gtttgtgaaggaagacagggggaggacattgga 22467551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 11 - 322
Target Start/End: Complemental strand, 22458418 - 22458110
Alignment:
11 agaaaatcttatagatatatcttccaaaattgttgaaaaatgcaatggattaccactcgcaattgtagtcattggtggtattttagcttgcaaagatagg 110  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||| |||||||||||||     
22458418 agaaaatcttattgatatatcttttaaaattgttgaaaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagataga 22458319  T
111 aatccaattgaatggtctaagtttagtgaaaatataaatgcagatctgtcaaaggaatattccatgatnnnnnnnnttctaggacttagttaccatgatt 210  Q
    ||| ||   ||||||| |||||||||||||||| |||||  |||   || ||| ||| |||  | |||        || |||| ||  |||||||||||     
22458318 aatacatcagaatggtataagtttagtgaaaatctaaatataga---gttaaaagaagatttgaagataaaaaaaattgtaggtctcggttaccatgatc 22458222  T
211 tgccttgcaacctcaagtaatgtttcttgtattttggattatatcctgaagactctaatgttcgttcaaatatattgactcatcaatggattgctgaagg 310  Q
    || ||| ||| ||||||| |||||| |||||||||||||||||||||||||  | ||  |||| | |||||||| ||| ||  |||||||| ||||||||    
22458221 tgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatactgattcggcaatggatggctgaagg 22458122  T
311 gtttgtgaaaga 322  Q
     |||||||||||    
22458121 atttgtgaaaga 22458110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 11 - 322
Target Start/End: Complemental strand, 22481399 - 22481091
Alignment:
11 agaaaatcttatagatatatcttccaaaattgttgaaaaatgcaatggattaccactcgcaattgtagtcattggtggtattttagcttgcaaagatagg 110  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||| |||||||||||||     
22481399 agaaaatcttattgatatatcttttaaaattgttgaaaaatgcaatggattgccactagcaattgtactcattggtggtattttatcttgcaaagataga 22481300  T
111 aatccaattgaatggtctaagtttagtgaaaatataaatgcagatctgtcaaaggaatattccatgatnnnnnnnnttctaggacttagttaccatgatt 210  Q
    ||| ||   ||||||| |||||||||||||||| |||||  |||   || ||| ||| |||  | |||        || |||| ||  |||||||||||     
22481299 aatacatcagaatggtataagtttagtgaaaatctaaatataga---gttaaaagaagatttgaagataaaaaaaattgtaggtctcggttaccatgatc 22481203  T
211 tgccttgcaacctcaagtaatgtttcttgtattttggattatatcctgaagactctaatgttcgttcaaatatattgactcatcaatggattgctgaagg 310  Q
    || ||| ||| ||||||| |||||| |||||||||||||||||||||||||  | ||  |||| | |||||||| ||| ||  |||||||| ||||||||    
22481202 tgtcttacaatctcaagtcatgtttgttgtattttggattatatcctgaaggttgtatagttcctacaaatatactgattcggcaatggatggctgaagg 22481103  T
311 gtttgtgaaaga 322  Q
     |||||||||||    
22481102 atttgtgaaaga 22481091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 230 - 331
Target Start/End: Complemental strand, 22620597 - 22620496
Alignment:
230 atgtttcttgtattttggattatatcctgaagactctaatgttcgttcaaatatattgactcatcaatggattgctgaagggtttgtgaaagaagaaagg 329  Q
    |||||| |||||||||||||||||||| ||||| | ||| |||  |||||| | ||||| ||  |||||||| |||||||||||||| ||||||||||||    
22620597 atgtttattgtattttggattatatccagaagattataaagttgattcaaagagattgattcggcaatggatagctgaagggtttgtaaaagaagaaagg 22620498  T
330 gg 331  Q
    ||    
22620497 gg 22620496  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 22620827 - 22620756
Alignment:
24 gatatatcttccaaaattgttgaaaaatgcaatggattaccactcgcaattgtagtcattggtggtatttta 95  Q
    |||||||||||| |||||| |  ||||||||| || |||||||| |||||||||| | |||||||| |||||    
22620827 gatatatcttccgaaattgctagaaaatgcaagggtttaccactagcaattgtagccgttggtggtctttta 22620756  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 331
Target Start/End: Complemental strand, 22656703 - 22656666
Alignment:
294 caatggattgctgaagggtttgtgaaagaagaaagggg 331  Q
    |||||||| |||||||| ||||||||||||||||||||    
22656703 caatggatagctgaaggttttgtgaaagaagaaagggg 22656666  T

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