View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17705_high_20 (Length: 238)

Name: NF17705_high_20
Description: NF17705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17705_high_20
NF17705_high_20
[»] chr3 (6 HSPs)
chr3 (16-238)||(37633984-37634206)
chr3 (16-238)||(37645186-37645408)
chr3 (16-238)||(37636898-37637120)
chr3 (16-238)||(37639812-37640034)
chr3 (16-238)||(37648099-37648321)
chr3 (16-238)||(37651011-37651233)
[»] chr4 (1 HSPs)
chr4 (100-238)||(32387333-32387471)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 37634206 - 37633984
Alignment:
Q  16 aaggtgttcaagtacaacatcatctccgatgaacccccaaccgatctcagggccatcaccatcgcacctaatgtcatgcaaactactttccgtaccttca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37634206 aaggtgttcaagtacaacatcatctccgatgaacccccaaccgatctcagggccatcaccatcgcacctaatgtcatgcaaactactttccgtaccttca 37634107  T
Q  116 ttgagatcatcttcgagaaccccggaaaggtcctccaatcttacaatttgggtggttattctttcttcgccgtcgctggtgagccaggaacatggacccc 215  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37634106 ttgagatcatcttcgagaaccccgaaaaggtcctccaatcttacaatttgggtggttattctttctttgccgtcgctggtgagccaggaacatggacccc 37634007  T
Q  216 agagaagaggaagggctacaacc 238  Q
    |||||||||||||||||||||||    
T  37634006 agagaagaggaagggctacaacc 37633984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 37645408 - 37645186
Alignment:
Q  16 aaggtgttcaagtacaacatcatctccgatgaacccccaaccgatctcagggccatcaccatcgcacctaatgtcatgcaaactactttccgtaccttca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37645408 aaggtgttcaagtacaacatcatctccgatgaacccccaaccgatctcagggccatcaccatcgcacctaatgtcatgcaaactactttccgtaccttca 37645309  T
Q  116 ttgagatcatcttcgagaaccccggaaaggtcctccaatcttacaatttgggtggttattctttcttcgccgtcgctggtgagccaggaacatggacccc 215  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37645308 ttgaaatcatcttcgagaaccccggaaaggtcctccaatcttacaatttgggtggttattctttcttcgccgtcgctggtgagccaggtacatggacccc 37645209  T
Q  216 agagaagaggaagggctacaacc 238  Q
    |||||||||||||||||||||||    
T  37645208 agagaagaggaagggctacaacc 37645186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 37637120 - 37636898
Alignment:
Q  16 aaggtgttcaagtacaacatcatctccgatgaacccccaaccgatctcagggccatcaccatcgcacctaatgtcatgcaaactactttccgtaccttca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37637120 aaggtgttcaagtacaacatcatctccgatgaacccccaaccgatctcaaggccatcaccatcgcacctaatgtcatgcaaactactttccgtaccttca 37637021  T
Q  116 ttgagatcatcttcgagaaccccggaaaggtcctccaatcttacaatttgggtggttattctttcttcgccgtcgctggtgagccaggaacatggacccc 215  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37637020 ttgagatcatcttcgagaaccccgaaaaggtcctccaatcttacaatttgggtggttattctttctttgccgtcgctggtgagccaggaacatggacccc 37636921  T
Q  216 agagaagaggaagggctacaacc 238  Q
    |||||||||||||||||||||||    
T  37636920 agagaagaggaagggctacaacc 37636898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 37640034 - 37639812
Alignment:
Q  16 aaggtgttcaagtacaacatcatctccgatgaacccccaaccgatctcagggccatcaccatcgcacctaatgtcatgcaaactactttccgtaccttca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37640034 aaggtgttcaagtacaacatcatctccgatgaacccccaaccgatctcaaggccatcaccatcgcacctaatgtcatgcaaactactttccgtaccttca 37639935  T
Q  116 ttgagatcatcttcgagaaccccggaaaggtcctccaatcttacaatttgggtggttattctttcttcgccgtcgctggtgagccaggaacatggacccc 215  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37639934 ttgagatcatcttcgagaaccccgaaaaggtcctccaatcttacaatttgggtggttattctttctttgccgtcgctggtgagccaggaacatggacccc 37639835  T
Q  216 agagaagaggaagggctacaacc 238  Q
    |||||||||||||||||||||||    
T  37639834 agagaagaggaagggctacaacc 37639812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 37648321 - 37648099
Alignment:
Q  16 aaggtgttcaagtacaacatcatctccgatgaacccccaaccgatctcagggccatcaccatcgcacctaatgtcatgcaaactactttccgtaccttca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37648321 aaggtgttcaagtacaacatcatctccgatgaacccccaaccgatctcaaggccatcaccatcgcacctaatgtcatgcaaactactttccgtaccttca 37648222  T
Q  116 ttgagatcatcttcgagaaccccggaaaggtcctccaatcttacaatttgggtggttattctttcttcgccgtcgctggtgagccaggaacatggacccc 215  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37648221 ttgagatcatcttcgagaaccccgaaaaggtcctccaatcttacaatttgggtggttattctttctttgccgtcgctggtgagccaggaacatggacccc 37648122  T
Q  216 agagaagaggaagggctacaacc 238  Q
    |||||||||||||||||||||||    
T  37648121 agagaagaggaagggctacaacc 37648099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 37651233 - 37651011
Alignment:
Q  16 aaggtgttcaagtacaacatcatctccgatgaacccccaaccgatctcagggccatcaccatcgcacctaatgtcatgcaaactactttccgtaccttca 115  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37651233 aaggtgttcaagtacaacatcatctccgatgaacccccaatcgatctcagggccatcaccattgcacctaatgtcatgcaaactactttccgtaccttca 37651134  T
Q  116 ttgagatcatcttcgagaaccccggaaaggtcctccaatcttacaatttgggtggttattctttcttcgccgtcgctggtgagccaggaacatggacccc 215  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  37651133 ttgaaatcatcttcgagaaccccggaaaggtcctccaatcttacaatttgggtggttattctttcttcgtcgtcgctggtgagccaggtacatggacccc 37651034  T
Q  216 agagaagaggaagggctacaacc 238  Q
    |||||||||||||||||||||||    
T  37651033 agagaagaggaagggctacaacc 37651011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 100 - 238
Target Start/End: Complemental strand, 32387471 - 32387333
Alignment:
Q  100 actttccgtaccttcattgagatcatcttcgagaaccccggaaaggtcctccaatcttacaatttgggtggttattctttcttcgccgtcgctggtgagc 199  Q
    |||||||| |||||| ||||||||||||||||||||||   ||||||| |||| ||||||||||||| |||||| |||||||||||||| |||| |||||    
T  32387471 actttccgcaccttcgttgagatcatcttcgagaaccctacaaaggtcatccagtcttacaatttggatggttactctttcttcgccgtggctgttgagc 32387372  T
Q  200 caggaacatggaccccagagaagaggaagggctacaacc 238  Q
    |||| | |||||| ||||||||||| |||  ||||||||    
T  32387371 caggcaaatggacaccagagaagagaaagaactacaacc 32387333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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