View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17705_high_21 (Length: 235)

Name: NF17705_high_21
Description: NF17705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17705_high_21
NF17705_high_21
[»] chr7 (3 HSPs)
chr7 (70-220)||(28180412-28180566)
chr7 (99-163)||(30120205-30120269)
chr7 (86-162)||(30125252-30125328)
[»] scaffold1051 (1 HSPs)
scaffold1051 (99-160)||(1971-2032)
[»] chr2 (2 HSPs)
chr2 (76-161)||(21430160-21430244)
chr2 (82-163)||(21426470-21426551)
[»] chr8 (2 HSPs)
chr8 (77-162)||(41311298-41311383)
chr8 (77-161)||(43164977-43165061)
[»] chr5 (1 HSPs)
chr5 (102-163)||(29261370-29261431)


Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 70 - 220
Target Start/End: Complemental strand, 28180566 - 28180412
Alignment:
Q  70 ttgacccggtatctagttcaattgaattagagattttctcattgagagctaataagtggaaacatatt----gagtgtggttctcatttaccttatatag 165  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||| ||||||||||| |    
T  28180566 ttgatccggtatctagttcaattgaattagagattttctcattgagagctaataagtggaaacatattaattgagtgtggttctcaattaccttatatgg 28180467  T
Q  166 ttgctgctagctatgatagcagtgaacagagttgctcttaaacggggctattcat 220  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28180466 ttgctgctagatatgatagcagtgaacagagttgctcttaaacggggctattcat 28180412  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 30120269 - 30120205
Alignment:
Q  99 gagattttctcattgagagctaataagtggaaacatattgagtgtggttctcatttaccttatat 163  Q
    |||||||||||||||||| ||||||||||||||||  |||||  ||||| |||||||||||||||    
T  30120269 gagattttctcattgagaactaataagtggaaacaagttgaggttggttttcatttaccttatat 30120205  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 30125328 - 30125252
Alignment:
Q  86 ttcaattgaattagagattttctcattgagagctaataagtggaaacatattgagtgtggttctcatttaccttata 162  Q
    ||||||||| || ||||||||| |||||||||||||||||||| |  | ||||||| || ||||||||| |||||||    
T  30125328 ttcaattgacttggagattttcccattgagagctaataagtgggaggaaattgagtttgattctcatttgccttata 30125252  T

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Target: scaffold1051 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1051
Description:

Target: scaffold1051; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 2032 - 1971
Alignment:
Q  99 gagattttctcattgagagctaataagtggaaacatattgagtgtggttctcatttacctta 160  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||    
T  2032 gagattttctcattgagagctaataagtggaaacaaattgagtttggttctcctttgcctta 1971  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 161
Target Start/End: Original strand, 21430160 - 21430244
Alignment:
Q  76 cggtatctagttcaattgaattagagattttctcattgagagctaataagtggaaacatattgagtgtggttctcatttaccttat 161  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| | |||||| | ||||||  || ||||||||| ||||||    
T  21430160 cggtatctagttcaattgacttagagattttctcattgagagctaatcaatggaaa-aaattgaggttgcttctcatttgccttat 21430244  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 21426470 - 21426551
Alignment:
Q  82 ctagttcaattgaattagagattttctcattgagagctaataagtggaaacatattgagtgtggttctcatttaccttatat 163  Q
    ||||||||||||| ||  |||||||||||||||||||| |||| |||||||| ||||||  || ||||||||| ||||||||    
T  21426470 ctagttcaattgacttgaagattttctcattgagagctcataaatggaaacaaattgaggttgcttctcatttgccttatat 21426551  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 162
Target Start/End: Complemental strand, 41311383 - 41311298
Alignment:
Q  77 ggtatctagttcaattgaattagagattttctcattgagagctaataagtggaaacatattgagtgtggttctcatttaccttata 162  Q
    |||||||||||||||||| || ||||||||||||||||||| |||| | ||| |||| ||||||| || |||| |||| |||||||    
T  41311383 ggtatctagttcaattgacttggagattttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgccttata 41311298  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 43165061 - 43164977
Alignment:
Q  77 ggtatctagttcaattgaattagagattttctcattgagagctaataagtggaaacatattgagtgtggttctcatttaccttat 161  Q
    |||||||||||| ||||| || |||||||||||||||||||||||| | ||| |||| ||||||| || |||| |||| ||||||    
T  43165061 ggtatctagttcgattgacttggagattttctcattgagagctaatgaatgggaacaaattgagtttgattctgatttgccttat 43164977  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 29261370 - 29261431
Alignment:
Q  102 attttctcattgagagctaataagtggaaacatattgagtgtggttctcatttaccttatat 163  Q
    ||||||||||||||||||||||||| ||||||  ||||   ||||| |||||||||||||||    
T  29261370 attttctcattgagagctaataagtagaaacaagttgatgttggttttcatttaccttatat 29261431  T

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