View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17705_high_4 (Length: 482)

Name: NF17705_high_4
Description: NF17705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17705_high_4
NF17705_high_4
[»] chr8 (2 HSPs)
chr8 (186-471)||(32907493-32907779)
chr8 (19-164)||(32906682-32906827)
[»] chr6 (1 HSPs)
chr6 (194-261)||(7441643-7441709)
[»] chr5 (1 HSPs)
chr5 (186-260)||(38956490-38956564)
[»] chr3 (1 HSPs)
chr3 (192-260)||(29566509-29566577)
[»] chr7 (1 HSPs)
chr7 (199-265)||(33810558-33810624)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 186 - 471
Target Start/End: Original strand, 32907493 - 32907779
Alignment:
Q  186 gtgggtcgagtaccccttgtactttccttgagttgtggtttaagtactctatgtacttctctccttatctaataaatt--gtcattnnnnnnnntgtaat 283  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||        ||||||    
T  32907493 gtgggtctagtaccccttgtactttccttgagttgtggtttaagtactctatgtacttctctccttatctaataaattttgtcattaaaaaaa-tgtaat 32907591  T
Q  284 gcaaactatccctggttttctatgttgtattattgtgttttactagttcattgttgatatgttgcataagaatgtgttttataaatactatccagttgtc 383  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32907592 gcaaactatccctggttttctatgttgtattattgtgttttactagttcattgttgatatgttgcataagaatgtgttttaaaaatactatccagttgtc 32907691  T
Q  384 tcttttaaccacatccttgaagaaccttcaacttgaaactatatcaatatgaatggccacaaaattcttgttgactgctaattttctt 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32907692 tcttttaaccacatccttgaagaaccttcaacttgaaactatatcaatatgaatggccacaaaattcttgttgactgctaattttctt 32907779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 32906682 - 32906827
Alignment:
Q  19 agatttggatttacgctgttttcccctcgacaataactttacttgcaacgctgcatcataattagtgaaaaatacccaaattcactttcttgcttgagtt 118  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32906682 agatttggttttacgctgttttcccctcgacaataactttacttgcaacgctgcatcataattagtgaaaaatacccaaattcactttcttgcttgagtt 32906781  T
Q  119 ttaatcaatgcaatgtttctcaatctttttcgaaatattgcttata 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  32906782 ttaatcaatgcaatgtttctcaatctttttcgaaatattgcttata 32906827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 7441643 - 7441709
Alignment:
Q  194 agtaccccttgtactttccttgagttgtggtttaagtactctatgtacttctctccttatctaataaa 261  Q
    |||||||||| |||||| | ||||||| || ||||||||||| ||||||||||||||| |||||||||    
T  7441643 agtaccccttatacttttcctgagttgcgggttaagtactctttgtacttctctcctt-tctaataaa 7441709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 260
Target Start/End: Original strand, 38956490 - 38956564
Alignment:
Q  186 gtgggtcgagtaccccttgtactttccttgagttgtggtttaagtactctatgtacttctctccttatctaataa 260  Q
    ||||| ||| ||||||||||| ||| ||||| |||||| ||||||||||| |||||||||||  |||| ||||||    
T  38956490 gtggggcgaataccccttgtatttttcttgatttgtgggttaagtactctttgtacttctcttattatataataa 38956564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 29566577 - 29566509
Alignment:
Q  192 cgagtaccccttgtactttccttgagttgtggtttaagtactctatgtacttctctccttatctaataa 260  Q
    |||||| |||||||| ||| || || |||||| |||||||||| || |||||||||| |||||||||||    
T  29566577 cgagtatcccttgtaattttctcgaattgtgggttaagtactccatatacttctctcattatctaataa 29566509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 265
Target Start/End: Complemental strand, 33810624 - 33810558
Alignment:
Q  199 cccttgtactttccttgagttgtggtttaagtactctatgtacttctctccttatctaataaattgt 265  Q
    |||||||||||| |  || |||||| ||||||||| | |||| ||||||| ||||||||||||||||    
T  33810624 cccttgtacttttcccgatttgtgggttaagtactttttgtaattctctctttatctaataaattgt 33810558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University