View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17705_high_6 (Length: 438)

Name: NF17705_high_6
Description: NF17705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17705_high_6
NF17705_high_6
[»] chr5 (5 HSPs)
chr5 (16-420)||(24199482-24199871)
chr5 (27-69)||(2063698-2063740)
chr5 (27-61)||(29434154-29434188)
chr5 (27-64)||(95470-95507)
chr5 (20-57)||(27560666-27560703)
[»] chr2 (7 HSPs)
chr2 (19-81)||(11064444-11064506)
chr2 (19-63)||(5137306-5137350)
chr2 (24-64)||(13982515-13982555)
chr2 (27-64)||(2029847-2029884)
chr2 (27-64)||(14466379-14466416)
chr2 (27-64)||(16419345-16419382)
chr2 (20-60)||(3185961-3186001)
[»] chr4 (6 HSPs)
chr4 (19-65)||(49190147-49190193)
chr4 (27-69)||(6218282-6218324)
chr4 (23-65)||(11265936-11265978)
chr4 (19-69)||(16197721-16197771)
chr4 (21-78)||(27634271-27634328)
chr4 (23-63)||(22445526-22445566)
[»] chr3 (5 HSPs)
chr3 (23-76)||(35018549-35018602)
chr3 (22-64)||(48500668-48500710)
chr3 (24-64)||(35700077-35700117)
chr3 (27-63)||(45828097-45828133)
chr3 (27-63)||(54567970-54568006)
[»] chr6 (3 HSPs)
chr6 (20-64)||(19385611-19385655)
chr6 (27-64)||(13353279-13353316)
chr6 (27-64)||(33796404-33796441)
[»] chr1 (4 HSPs)
chr1 (22-78)||(4112730-4112786)
chr1 (27-63)||(4112976-4113012)
chr1 (20-50)||(39007191-39007221)
chr1 (19-57)||(41590502-41590540)
[»] scaffold0048 (1 HSPs)
scaffold0048 (27-65)||(81920-81958)
[»] chr8 (6 HSPs)
chr8 (27-69)||(36917403-36917445)
chr8 (27-64)||(8084205-8084242)
chr8 (27-64)||(11232163-11232200)
chr8 (27-64)||(11232398-11232435)
chr8 (23-64)||(42584744-42584785)
chr8 (27-63)||(10615472-10615508)
[»] scaffold0519 (1 HSPs)
scaffold0519 (27-64)||(1994-2031)
[»] scaffold0129 (1 HSPs)
scaffold0129 (27-64)||(14381-14418)
[»] chr7 (4 HSPs)
chr7 (27-64)||(1596671-1596708)
chr7 (27-64)||(21861372-21861409)
chr7 (27-64)||(25620214-25620251)
chr7 (27-64)||(33834269-33834306)
[»] scaffold0692 (1 HSPs)
scaffold0692 (27-63)||(5724-5760)


Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 420
Target Start/End: Original strand, 24199482 - 24199871
Alignment:
Q  16 attaacccaaattctaagatggtatcggagcctatccaagatccattggatcactcgctatcatgtctctcgttatcatgtctctcgttatcaagttcct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||    
T  24199482 attaacccaaattctaagatggtatcggagcctatccaagatccattggatcactcgctatcatgtctctcgttatca---------------agttcct 24199566  T
Q  116 tagttcatgctttagtctttagatgtgtcctgcttgtgannnnnnntgtttagagtcccacattggataaaataagtctttggaaataagtatatatgtg 215  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24199567 tagttcatgctttagtctttagatgtgtcctgcttgtgagggggggtgtttagagtcccacattggataaaataagtctttggaaataagtatatatgtg 24199666  T
Q  216 gggaagtattccttactttacttctcggctttatatggttgagttaaaccaaaccaaaattgagttatgtgtgtgaatcaacaaatatataccagatatt 315  Q
    | || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24199667 gagaggtattccttactttacttgtcggctttatatggttgagttaaaccaaaccaaaattgagttatgtgtgtgaatcaacaaatatataccagatatt 24199766  T
Q  316 ttgtnnnnnnntgttcacaataagtgctataagagtgttttaggctgattttatttcaatatataagttcctgtgttgataaaatctgatgttagtaaga 415  Q
    ||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24199767 ttgtaaaaaaatgttcacaataagtgctataagagtgttttaggctgattttatttcaatatataagttcctgtgttgataaaatctgatgttagtaaga 24199866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 2063740 - 2063698
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccattggatcac 69  Q
    ||||||||||||||| |||||| | ||||||||||||||||||    
T  2063740 ttctaagatggtatcagagcctcttcaagatccattggatcac 2063698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 29434154 - 29434188
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccat 61  Q
    ||||||||||||||| |||||||||||||||||||    
T  29434154 ttctaagatggtatcagagcctatccaagatccat 29434188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 95507 - 95470
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccattgg 64  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  95507 ttctaagatggtatcagagcctctccaagatccattgg 95470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 27560703 - 27560666
Alignment:
Q  20 acccaaattctaagatggtatcggagcctatccaagat 57  Q
    |||| ||||||||||||||||| |||||||||||||||    
T  27560703 acccgaattctaagatggtatcagagcctatccaagat 27560666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 11064506 - 11064444
Alignment:
Q  19 aacccaaattctaagatggtatcggagcctatccaagatccattggatcactcgctatcatgt 81  Q
    |||||||||||||| ||||||||||||||||||||||| |||||| | ||||||||| |||||    
T  11064506 aacccaaattctaatatggtatcggagcctatccaagagccattgtaccactcgctaccatgt 11064444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 5137306 - 5137350
Alignment:
Q  19 aacccaaattctaagatggtatcggagcctatccaagatccattg 63  Q
    ||||||||||||||||||||||  |||| ||||||||||||||||    
T  5137306 aacccaaattctaagatggtattagagcttatccaagatccattg 5137350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 13982555 - 13982515
Alignment:
Q  24 aaattctaagatggtatcggagcctatccaagatccattgg 64  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  13982555 aaattcaaagatggtatcagagcctatccaagatccattgg 13982515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 2029847 - 2029884
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccattgg 64  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  2029847 ttctaagatggtatcagagcctctccaagatccattgg 2029884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 14466416 - 14466379
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccattgg 64  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  14466416 ttctaagatggtatcagagcctctccaagatccattgg 14466379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 16419345 - 16419382
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccattgg 64  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  16419345 ttctaagatggtatcagagcctctccaagatccattgg 16419382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 3185961 - 3186001
Alignment:
Q  20 acccaaattctaagatggtatcggagcctatccaagatcca 60  Q
    ||||||||| |||||||||||| |||||||||||| |||||    
T  3185961 acccaaattttaagatggtatcagagcctatccaaaatcca 3186001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 49190193 - 49190147
Alignment:
Q  19 aacccaaattctaagatggtatcggagcctatccaagatccattgga 65  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  49190193 aacccaaattctaagatggtatcagagcctatccaagatccgttgga 49190147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 6218282 - 6218324
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccattggatcac 69  Q
    ||||||||||||||| |||||| ||||||||||||||||||||    
T  6218282 ttctaagatggtatcagagcctctccaagatccattggatcac 6218324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 11265936 - 11265978
Alignment:
Q  23 caaattctaagatggtatcggagcctatccaagatccattgga 65  Q
    |||||| |||||||||||| ||| |||||||||||||||||||    
T  11265936 caaattttaagatggtatctgagtctatccaagatccattgga 11265978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 16197771 - 16197721
Alignment:
Q  19 aacccaaattctaagatggtatcggagcctatccaagatccattggatcac 69  Q
    |||| |||||||||||||||||  | | |||||||||||||||||||||||    
T  16197771 aacctaaattctaagatggtattagtgtctatccaagatccattggatcac 16197721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 27634328 - 27634271
Alignment:
Q  21 cccaaattctaagatggtatcggagcctatccaagatccattggatcactcgctatca 78  Q
    ||||||||  || |||||||| |||||| |||||||||||||||| |||| |||||||    
T  27634328 cccaaattacaacatggtatcagagcctctccaagatccattggaccacttgctatca 27634271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 22445526 - 22445566
Alignment:
Q  23 caaattctaagatggtatcggagcctatccaagatccattg 63  Q
    ||||||||||||||||||| |||||| | ||||||||||||    
T  22445526 caaattctaagatggtatcagagcctcttcaagatccattg 22445566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 35018549 - 35018602
Alignment:
Q  23 caaattctaagatggtatcggagcctatccaagatccattggatcactcgctat 76  Q
    |||||||||||||| |||| ||||||||||||||||| |||| ||||| |||||    
T  35018549 caaattctaagatgatatcagagcctatccaagatccgttgggtcacttgctat 35018602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 48500668 - 48500710
Alignment:
Q  22 ccaaattctaagatggtatcggagcctatccaagatccattgg 64  Q
    ||||||| ||||||||||| |||||||||||||||| ||||||    
T  48500668 ccaaattgtaagatggtatgggagcctatccaagatacattgg 48500710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 35700117 - 35700077
Alignment:
Q  24 aaattctaagatggtatcggagcctatccaagatccattgg 64  Q
    ||||||||||||||||||| || |||||| |||||||||||    
T  35700117 aaattctaagatggtatcgaagtctatccgagatccattgg 35700077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 45828097 - 45828133
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccattg 63  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  45828097 ttctaagatggtatcagagcctctccaagatccattg 45828133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 54567970 - 54568006
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccattg 63  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  54567970 ttctaagatggtatcagagcctctccaagatccattg 54568006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 19385611 - 19385655
Alignment:
Q  20 acccaaattctaagatggtatcggagcctatccaagatccattgg 64  Q
    ||||||||||||||||||||||  ||||||||||||||| |||||    
T  19385611 acccaaattctaagatggtatcaaagcctatccaagatctattgg 19385655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 13353279 - 13353316
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccattgg 64  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  13353279 ttctaagatggtatcagagcctctccaagatccattgg 13353316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 33796404 - 33796441
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccattgg 64  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  33796404 ttctaagatggtatcagagcctctccaagatccattgg 33796441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 4112786 - 4112730
Alignment:
Q  22 ccaaattctaagatggtatcggagcctatccaagatccattggatcactcgctatca 78  Q
    |||| ||||||||||||||| |||||| |||||||||||||||| |||  |||||||    
T  4112786 ccaatttctaagatggtatcagagcctctccaagatccattggaccacctgctatca 4112730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 4113012 - 4112976
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccattg 63  Q
    |||||||||||||||||||||| ||||||||||||||    
T  4113012 ttctaagatggtatcggagcctctccaagatccattg 4112976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 50
Target Start/End: Original strand, 39007191 - 39007221
Alignment:
Q  20 acccaaattctaagatggtatcggagcctat 50  Q
    |||||||||||||||||||||||||||||||    
T  39007191 acccaaattctaagatggtatcggagcctat 39007221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 41590540 - 41590502
Alignment:
Q  19 aacccaaattctaagatggtatcggagcctatccaagat 57  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  41590540 aacccaaattctaagatggtatcagagcctatcctagat 41590502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 81920 - 81958
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccattgga 65  Q
    ||||||||||||||| |||||| ||||||||||||||||    
T  81920 ttctaagatggtatcagagcctctccaagatccattgga 81958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 36917445 - 36917403
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccattggatcac 69  Q
    ||||||||||||||| |||||| |||||||||||||| |||||    
T  36917445 ttctaagatggtatcagagcctctccaagatccattgaatcac 36917403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 8084205 - 8084242
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccattgg 64  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  8084205 ttctaagatggtatcagagcctctccaagatccattgg 8084242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 11232200 - 11232163
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccattgg 64  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  11232200 ttctaagatggtatcagagcctctccaagatccattgg 11232163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 11232435 - 11232398
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccattgg 64  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  11232435 ttctaagatggtatcagagcctctccaagatccattgg 11232398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 42584744 - 42584785
Alignment:
Q  23 caaattctaagatggtatcggagcctatccaagatccattgg 64  Q
    |||||||||||| |||||| ||||||||||||||||| ||||    
T  42584744 caaattctaagacggtatcagagcctatccaagatccgttgg 42584785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 10615472 - 10615508
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccattg 63  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  10615472 ttctaagatggtatcagagcctctccaagatccattg 10615508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 1994 - 2031
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccattgg 64  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  1994 ttctaagatggtatcagagcctctccaagatccattgg 2031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 14381 - 14418
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccattgg 64  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  14381 ttctaagatggtatcagagcctctccaagatccattgg 14418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 1596671 - 1596708
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccattgg 64  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  1596671 ttctaagatggtatcagagcctctccaagatccattgg 1596708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 21861372 - 21861409
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccattgg 64  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  21861372 ttctaagatggtatcagagcctctccaagatccattgg 21861409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 25620214 - 25620251
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccattgg 64  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  25620214 ttctaagatggtatcagagcctctccaagatccattgg 25620251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 64
Target Start/End: Original strand, 33834269 - 33834306
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccattgg 64  Q
    ||||||||||||||| |||||| |||||||||||||||    
T  33834269 ttctaagatggtatcagagcctctccaagatccattgg 33834306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 5760 - 5724
Alignment:
Q  27 ttctaagatggtatcggagcctatccaagatccattg 63  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  5760 ttctaagatggtatcagagcctctccaagatccattg 5724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University