View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17705_high_9 (Length: 379)

Name: NF17705_high_9
Description: NF17705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17705_high_9
NF17705_high_9
[»] chr3 (3 HSPs)
chr3 (16-365)||(51121021-51121370)
chr3 (310-349)||(51764584-51764623)
chr3 (318-363)||(13470862-13470907)
[»] chr2 (1 HSPs)
chr2 (81-363)||(45245215-45245493)
[»] chr6 (11 HSPs)
chr6 (311-364)||(7119074-7119127)
chr6 (310-363)||(6394780-6394833)
chr6 (311-364)||(6603331-6603384)
chr6 (311-364)||(7131552-7131605)
chr6 (311-363)||(6432078-6432130)
chr6 (310-343)||(6594756-6594789)
chr6 (319-349)||(6589467-6589497)
chr6 (317-354)||(28934972-28935009)
chr6 (317-349)||(6415889-6415921)
chr6 (321-349)||(7994326-7994354)
chr6 (317-349)||(10579881-10579913)
[»] chr4 (10 HSPs)
chr4 (227-363)||(553312-553448)
chr4 (227-363)||(55505235-55505371)
chr4 (219-349)||(1524627-1524757)
chr4 (232-349)||(1545611-1545728)
chr4 (282-346)||(570239-570303)
chr4 (297-352)||(558401-558456)
chr4 (305-352)||(644742-644789)
chr4 (227-349)||(640748-640870)
chr4 (303-363)||(546822-546882)
chr4 (317-349)||(53761913-53761945)
[»] chr7 (2 HSPs)
chr7 (310-363)||(10614509-10614562)
chr7 (293-349)||(15092295-15092351)
[»] chr8 (2 HSPs)
chr8 (282-364)||(21235446-21235528)
chr8 (222-338)||(34936318-34936434)
[»] chr5 (3 HSPs)
chr5 (322-363)||(17205527-17205568)
chr5 (310-352)||(20478223-20478265)
chr5 (311-363)||(41901665-41901717)
[»] chr1 (1 HSPs)
chr1 (321-363)||(7554415-7554457)


Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 16 - 365
Target Start/End: Complemental strand, 51121370 - 51121021
Alignment:
Q  16 attggagtgtttattatcgcgcacaacctaatgagcatatccttttcttaaaagtaattagagacgtaaatttgaaaacaaaaaacatcttacatttcaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51121370 attggagtgtttattatcgcgcacaacctaatgagcatatccttttcttaaaagtaattagagacgtaaatttgaaaacaaaaaacatcttacatttcaa 51121271  T
Q  116 aagttcaaacttccacagagcagcctcagaatgctagcaaacaagacttccatgatgacgcaaaaagagttccctctctctatctttgaaatgataaggg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  51121270 aagttcaaacttccacagagcagcctcagaatgctagcaaacaagacaaccatgatgacgcgaaaagagttccctctctctatctttgaaatgataagag 51121171  T
Q  216 aaaggaacaaatatctttctcaacgatgaccttgaaaagactattgaggcaacaaaatcagcatggactttatagcaatacctcaagttgatcactctca 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51121170 aaaggaacaaatatctttctcaacgatgaccttgaaaagactattgaggcaacaaaatcagcatggactttatagcaatacctcaagttgatcactctca 51121071  T
Q  316 attgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatac 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51121070 attgtgtgcagttttctaccacatgtttcactcctttttgtgtgacatac 51121021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 51764623 - 51764584
Alignment:
Q  310 ctctcaattgtgtgcagttttctaccacatgtttcactcc 349  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  51764623 ctctcaattgtgtgcagttttcaaccacatgtttcactcc 51764584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 363
Target Start/End: Complemental strand, 13470907 - 13470862
Alignment:
Q  318 tgtgtgcagttttctaccacatgtttcactcctttttgtgtgacat 363  Q
    ||||||||||| |||||||||||||||||||| | || ||||||||    
T  13470907 tgtgtgcagttctctaccacatgtttcactccctcttctgtgacat 13470862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 81 - 363
Target Start/End: Complemental strand, 45245493 - 45245215
Alignment:
Q  81 gtaaatttgaaaacaaaaaacatcttacatttcaaaagttcaaacttccacagagcagcctcagaatgctagcaaacaagacttccatgatgacgcaaaa 180  Q
    ||||||| ||||||||||||||||||||| |||||| ||||||||||    |||||||  |||||||||||||||||||| | ||| |||   ||| | |    
T  45245493 gtaaattcgaaaacaaaaaacatcttacacttcaaa-gttcaaacttaagtagagcagtttcagaatgctagcaaacaaggcatccttga---cgcgaca 45245398  T
Q  181 agagttccctctctctatctttgaaatgataagggaaaggaacaaatatctttctcaacgatgaccttgaaaagactattgaggcaacaaaatcagcatg 280  Q
    ||||||||| ||||   |   ||| ||||||| | |  ||||||  ||||||| ||||||||| ||||||||| || || ||| ||| || || ||||||    
T  45245397 agagttcccgctcttgttgactgatatgataaagaactggaacatttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatg 45245298  T
Q  281 gactttatagcaatacctcaagttgatcactctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacat 363  Q
     |||| | |||| | |||||| |||||| || | | ||||||||| ||||||||||||||||||||||| || | ||||||||    
T  45245297 cacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcaattttctaccacatgtttcactcccttatctgtgacat 45245215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 311 - 364
Target Start/End: Original strand, 7119074 - 7119127
Alignment:
Q  311 tctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacata 364  Q
    |||||||||||||||||||||| |||||||||||||| |||||| |||||||||    
T  7119074 tctcaattgtgtgcagttttcttccacatgtttcacttctttttttgtgacata 7119127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 6394780 - 6394833
Alignment:
Q  310 ctctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacat 363  Q
    ||||||||||||||||||||||||||||||||| ||| || |||| ||||||||    
T  6394780 ctctcaattgtgtgcagttttctaccacatgttccacacccttttctgtgacat 6394833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 364
Target Start/End: Complemental strand, 6603384 - 6603331
Alignment:
Q  311 tctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacata 364  Q
    ||||| |||| ||||||||||||||||||||||||||||||| | |||||||||    
T  6603384 tctcagttgtttgcagttttctaccacatgtttcactcctttctctgtgacata 6603331  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 364
Target Start/End: Original strand, 7131552 - 7131605
Alignment:
Q  311 tctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacata 364  Q
    |||||||||||||||||||||| |||||||||||||| |||| | |||||||||    
T  7131552 tctcaattgtgtgcagttttcttccacatgtttcactgctttgtttgtgacata 7131605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 311 - 363
Target Start/End: Original strand, 6432078 - 6432130
Alignment:
Q  311 tctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacat 363  Q
    ||||||||||||||| |||||||||||| |||||||||| || ||||||||||    
T  6432078 tctcaattgtgtgcatttttctaccacaagtttcactcccttctgtgtgacat 6432130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 343
Target Start/End: Complemental strand, 6594789 - 6594756
Alignment:
Q  310 ctctcaattgtgtgcagttttctaccacatgttt 343  Q
    ||||||||||||||||||||||||||||||||||    
T  6594789 ctctcaattgtgtgcagttttctaccacatgttt 6594756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 319 - 349
Target Start/End: Complemental strand, 6589497 - 6589467
Alignment:
Q  319 gtgtgcagttttctaccacatgtttcactcc 349  Q
    |||||||||||||||||||||||||||||||    
T  6589497 gtgtgcagttttctaccacatgtttcactcc 6589467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 28934972 - 28935009
Alignment:
Q  317 ttgtgtgcagttttctaccacatgtttcactccttttt 354  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  28934972 ttgtgtgcaattttctaccacatgcttcactccttttt 28935009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 349
Target Start/End: Original strand, 6415889 - 6415921
Alignment:
Q  317 ttgtgtgcagttttctaccacatgtttcactcc 349  Q
    |||||||||||| ||||||||||||||||||||    
T  6415889 ttgtgtgcagttctctaccacatgtttcactcc 6415921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 349
Target Start/End: Complemental strand, 7994354 - 7994326
Alignment:
Q  321 gtgcagttttctaccacatgtttcactcc 349  Q
    |||||||||||||||||||||||||||||    
T  7994354 gtgcagttttctaccacatgtttcactcc 7994326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 349
Target Start/End: Complemental strand, 10579913 - 10579881
Alignment:
Q  317 ttgtgtgcagttttctaccacatgtttcactcc 349  Q
    ||||||||||||||||||||||||||| |||||    
T  10579913 ttgtgtgcagttttctaccacatgtttaactcc 10579881  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 363
Target Start/End: Original strand, 553312 - 553448
Alignment:
Q  227 tatctttctcaacgatgaccttgaaaagactattgaggcaacaaaatcagcatggactttatagcaatacctcaagttgatcactctcaattgtgtgcag 326  Q
    |||||||||||| |||| || ||||   || ||||||||||||| ||  ||||| |||||||  |||  || ||| | |||| |||| | ||||||||||    
T  553312 tatctttctcaatgatgtccgtgaatgtaccattgaggcaacaacatttgcatgcactttatcacaaccccccaaatcgatctctctaagttgtgtgcag 553411  T
Q  327 ttttctaccacatgtttcactcctttttgtgtgacat 363  Q
    |||||||||||||| ||||||||||| | ||||||||    
T  553412 ttttctaccacatgattcactcctttatctgtgacat 553448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 363
Target Start/End: Complemental strand, 55505371 - 55505235
Alignment:
Q  227 tatctttctcaacgatgaccttgaaaagactattgaggcaacaaaatcagcatggactttatagcaatacctcaagttgatcactctcaattgtgtgcag 326  Q
    |||||||||||| |||| ||||||||| || |||||| |||||| |  || ||| |||||||  |||    ||||||||||| |||| | ||||||||||    
T  55505371 tatctttctcaatgatggccttgaaaataccattgagtcaacaacactagtatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcag 55505272  T
Q  327 ttttctaccacatgtttcactcctttttgtgtgacat 363  Q
    ||||||| ||| ||||||||||| || | ||||||||    
T  55505271 ttttctaacacgtgtttcactcccttctctgtgacat 55505235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 349
Target Start/End: Complemental strand, 1524757 - 1524627
Alignment:
Q  219 ggaacaaatatctttctcaacgatgaccttgaaaagactattgaggcaacaaaatcagcatggactttatagcaatacctcaagttgatcactctcaatt 318  Q
    ||||||| ||||| |||||| ||||  ||||| || |  ||||||||||||||   |||||| |||||| | |||  |||||| || ||| |||||| ||    
T  1524757 ggaacaattatctctctcaatgatggtcttgataatagcattgaggcaacaaagctagcatgaactttacaacaacccctcaaattaatctctctcagtt 1524658  T
Q  319 gtgtgcagttttctaccacatgtttcactcc 349  Q
    ||||||||||||||| |||||  ||||||||    
T  1524657 gtgtgcagttttctatcacataattcactcc 1524627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 232 - 349
Target Start/End: Original strand, 1545611 - 1545728
Alignment:
Q  232 ttctcaacgatgaccttgaaaagactattgaggcaacaaaatcagcatggactttatagcaatacctcaagttgatcactctcaattgtgtgcagttttc 331  Q
    ||||||| |||| |||||| || |||| | | |||| || || |||||| |||||||  |||  |||||| ||||||||||| | ||||||||||||||     
T  1545611 ttctcaatgatggccttgataatactaataaagcaataacattagcatgcactttatcacaacccctcaaattgatcactcttagttgtgtgcagttttt 1545710  T
Q  332 taccacatgtttcactcc 349  Q
    |||| ||| |||||||||    
T  1545711 taccgcatctttcactcc 1545728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 346
Target Start/End: Original strand, 570239 - 570303
Alignment:
Q  282 actttatagcaatacctcaagttgatcactctcaattgtgtgcagttttctaccacatgtttcac 346  Q
    ||||||||||| | | |||| |||||| | |||| |||||||||||||||||||||||| |||||    
T  570239 actttatagcagttcttcaaattgatctccctcagttgtgtgcagttttctaccacatgattcac 570303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 558401 - 558456
Alignment:
Q  297 ctcaagttgatcactctcaattgtgtgcagttttctaccacatgtttcactccttt 352  Q
    ||||| |||||  |||||| ||||||||||||||||| |||||| |||||||||||    
T  558401 ctcaaattgatttctctcatttgtgtgcagttttctagcacatgcttcactccttt 558456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 644742 - 644789
Alignment:
Q  305 gatcactctcaattgtgtgcagttttctaccacatgtttcactccttt 352  Q
    |||| |||||| ||||||||| ||||| ||||||||||||||||||||    
T  644742 gatctctctcagttgtgtgcatttttcaaccacatgtttcactccttt 644789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 349
Target Start/End: Original strand, 640748 - 640870
Alignment:
Q  227 tatctttctcaacgatgaccttgaaaagactattgaggcaacaaaatcagcatggactttatagcaatacctcaagttgatcactctcaattgtgtgcag 326  Q
    |||||||||||| |||| ||||||||| || |||||| |||| | || |||||  |||||||  |||  | | || |||| | |||| |||| | |||||    
T  640748 tatctttctcaatgatggccttgaaaataccattgagtcaacgacattagcattcactttattacaaccctttaaattgacctctcttaattctttgcag 640847  T
Q  327 ttttctaccacatgtttcactcc 349  Q
    |||||||||||||| ||||||||    
T  640848 ttttctaccacatgattcactcc 640870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 363
Target Start/End: Original strand, 546822 - 546882
Alignment:
Q  303 ttgatcactctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacat 363  Q
    |||||| |||| | || |||||||||||||| ||||||||||||||| || | ||||||||    
T  546822 ttgatctctcttagttttgtgcagttttctagcacatgtttcactcccttctctgtgacat 546882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 317 - 349
Target Start/End: Complemental strand, 53761945 - 53761913
Alignment:
Q  317 ttgtgtgcagttttctaccacatgtttcactcc 349  Q
    |||||||||||||||| ||||||||||||||||    
T  53761945 ttgtgtgcagttttcttccacatgtttcactcc 53761913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 10614509 - 10614562
Alignment:
Q  310 ctctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacat 363  Q
    ||||||||||  |||||||||||||||||||||||||||||| || ||||||||    
T  10614509 ctctcaattgcatgcagttttctaccacatgtttcactccttcttctgtgacat 10614562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 15092351 - 15092295
Alignment:
Q  293 atacctcaagttgatcactctcaattgtgtgcagttttctaccacatgtttcactcc 349  Q
    ||||| ||| || ||| |||||||||||||||||||||||| |||||||||||||||    
T  15092351 ataccgcaaattaatctctctcaattgtgtgcagttttctagcacatgtttcactcc 15092295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 282 - 364
Target Start/End: Original strand, 21235446 - 21235528
Alignment:
Q  282 actttatagcaatacctcaagttgatcactctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacata 364  Q
    ||||||||||| | | |||| |||||| | |||| |||||||||||||||||||||||| ||||| ||| |||  ||||||||    
T  21235446 actttatagcagttcttcaaattgatctccctcagttgtgtgcagttttctaccacatgattcacgcctcttttagtgacata 21235528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 338
Target Start/End: Complemental strand, 34936434 - 34936318
Alignment:
Q  222 acaaatatctttctcaacgatgaccttgaaaagactattgaggcaacaaaatcagcatggactttatagcaatacctcaagttgatcactctcaattgtg 321  Q
    |||| ||||||||||||| ||| |||||||   |  || |||| ||||| || |||||  ||||||| ||| | |||||| |||||| | ||||||||||    
T  34936434 acaattatctttctcaacaatggccttgaagttatcatcgaggtaacaacattagcatccactttatggcagttcctcaaattgatctccctcaattgtg 34936335  T
Q  322 tgcagttttctaccaca 338  Q
    |||| ||||| ||||||    
T  34936334 tgcaattttcaaccaca 34936318  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 322 - 363
Target Start/End: Original strand, 17205527 - 17205568
Alignment:
Q  322 tgcagttttctaccacatgtttcactcctttttgtgtgacat 363  Q
    |||||||||||||||||||||||| |||||||| ||||||||    
T  17205527 tgcagttttctaccacatgtttcaatcctttttctgtgacat 17205568  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 352
Target Start/End: Complemental strand, 20478265 - 20478223
Alignment:
Q  310 ctctcaattgtgtgcagttttctaccacatgtttcactccttt 352  Q
    |||||| |||||||||||||||||| ||||||||| |||||||    
T  20478265 ctctcagttgtgtgcagttttctacgacatgtttcgctccttt 20478223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 363
Target Start/End: Complemental strand, 41901717 - 41901665
Alignment:
Q  311 tctcaattgtgtgcagttttctaccacatgtttcactcctttttgtgtgacat 363  Q
    ||||||||| || ||||||||||||||||| |||||||| || | ||||||||    
T  41901717 tctcaattgcgtacagttttctaccacatgcttcactcccttctttgtgacat 41901665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 321 - 363
Target Start/End: Original strand, 7554415 - 7554457
Alignment:
Q  321 gtgcagttttctaccacatgtttcactcctttttgtgtgacat 363  Q
    |||||||||||||||||||| |||||||| |||| ||||||||    
T  7554415 gtgcagttttctaccacatgcttcactcccttttctgtgacat 7554457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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