View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17705_low_11 (Length: 361)
Name: NF17705_low_11
Description: NF17705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17705_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 201 - 345
Target Start/End: Original strand, 29013638 - 29013782
Alignment:
| Q |
201 |
atggccaccacgctttcttctcctttttctaccaccttcaaccacaactccctcatcacaggaaccaaattcactcactttaacatcatttttgttggag |
300 |
Q |
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| T |
29013638 |
atggccaccacgctttcttctcctttttctaccaccttcaaccacaactccctcatcacaggaaccaaattcactcactttaacatcatttttgttggag |
29013737 |
T |
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| Q |
301 |
aatctaggagatcgtctacgtgacgaaacttcatggctcaaattg |
345 |
Q |
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| T |
29013738 |
aatctaggagatcgtctacgtgacggaacttcatggctcaaattg |
29013782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 4 - 137
Target Start/End: Original strand, 29013441 - 29013574
Alignment:
| Q |
4 |
gccggtcgcagagctaattcttgttcctttgtccacccttctgcagcttaaccaccaacgcgctttctcttccttttcacaccacattcaacttcttcct |
103 |
Q |
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| T |
29013441 |
gccgttcgcagagccaattcttgttccttagtccacccttctgcaacttcaccaccaacgcgctttctcttccttttcacaccacattcaacttcttcct |
29013540 |
T |
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| Q |
104 |
tcctcaagtcttccactatttcacaaccatcgtg |
137 |
Q |
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| T |
29013541 |
tcctcaagtcttccactatttcacaaccatcgtg |
29013574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 13141489 - 13141384
Alignment:
| Q |
22 |
tcttgttcctttgtccacccttctgcagcttaaccaccaacgcgctttctcttccttttcacaccacattcaacttcttccttcctcaagtcttccacta |
121 |
Q |
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| T |
13141489 |
tcttgttccttactccacccttccgcaactacaccaccaacgcgttttctcttccttttcacaccaccttcaatttcttccttcatcaactcttccacta |
13141390 |
T |
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| Q |
122 |
tttcac |
127 |
Q |
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|||||| |
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| T |
13141389 |
tttcac |
13141384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 13141220 - 13141157
Alignment:
| Q |
255 |
atcacaggaaccaaattcactcactttaacatcatttttgttggagaatctaggagatcgtcta |
318 |
Q |
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| T |
13141220 |
atcacaagaaccaaattcactcactttaacatcatttttcttcaagaatctaggagatcgtcta |
13141157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 258
Target Start/End: Complemental strand, 13141328 - 13141274
Alignment:
| Q |
204 |
gccaccacgctttcttctcctttttctaccaccttcaaccacaactccctcatca |
258 |
Q |
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| T |
13141328 |
gccaccgcgctttcttctcctttttctaccaccttcacctacaactcccttatca |
13141274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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