View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17705_low_12 (Length: 347)
Name: NF17705_low_12
Description: NF17705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17705_low_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 27701221 - 27700869
Alignment:
| Q |
1 |
cattgtatatgattgatgatgattccattgttgaaactgatttgcctggatataatctatagattgcccttttattattaaataattgattcaattctta |
100 |
Q |
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| T |
27701221 |
cattgtatatgattgatgatgattccattgttgaaactgatttgcctggatataatctatggattgcccttttattattaaataattgattcaattctta |
27701122 |
T |
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| Q |
101 |
aattttatgcatgtttgtagtcaatagt--aatttttaa----taacatgttctaaaccatttcataatttgtatgattgaaactaatgcatctgtttta |
194 |
Q |
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| T |
27701121 |
aattttatgcatgtttgtagtcaattcttaaattcttaaattttaacatgttctaaaccatttcataatttgtatgattgaaactaatgcatctgtttta |
27701022 |
T |
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| Q |
195 |
taggctggactgtactttggttttggacctctctgtatttatctagctatacgctacatggatcgcttcctttctgtagttgacatgctggtaagtcaat |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27701021 |
taggctggactgtactttggttttggacctctctgtatttatctagctatacgctacatggatcgcttcctttctgtagttgacatgctggtaagtcaat |
27700922 |
T |
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| Q |
295 |
tgatgaagtgaagaagatgatgttttttattgttgttttcattatattgtttg |
347 |
Q |
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||||||||||||||||||| |||||||| |||||||||||||||| ||||||| |
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| T |
27700921 |
tgatgaagtgaagaagatggtgttttttgttgttgttttcattatgttgtttg |
27700869 |
T |
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