View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17705_low_14 (Length: 313)
Name: NF17705_low_14
Description: NF17705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17705_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 7e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 132 - 297
Target Start/End: Complemental strand, 34424864 - 34424699
Alignment:
| Q |
132 |
gacacctctaaggcatcaactactaactgatgacaaattaggaagagactcgtaaaccgtatatcaagagtttccaaattatctgttcccaatttgcatg |
231 |
Q |
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| T |
34424864 |
gacacctctaaggcatcaactactaactgatgacaaattaggaagagactcgtaaaccgtatatcaagagtttccaaattatctgttcccaatttgcatg |
34424765 |
T |
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| Q |
232 |
agtccatacctttatttcttaacatcaatcttgtcaaccatgtttcaaaacttcaatctgtgtttt |
297 |
Q |
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| T |
34424764 |
agtccatacctttatttcttaacatcaatcttgtcaaccatgtttcaaaacttcaatctgtgtttt |
34424699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 34424980 - 34424914
Alignment:
| Q |
17 |
gttaactttattactttgagctaccaaaggaaaactttctgttggtttttcct-taggttagatgag |
82 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34424980 |
gttaactttattactttgagctaccaaaggaaaactttctgttggtttttcctgtaggttagatgag |
34424914 |
T |
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