View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17705_low_16 (Length: 289)

Name: NF17705_low_16
Description: NF17705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17705_low_16
NF17705_low_16
[»] chr8 (7 HSPs)
chr8 (16-170)||(21276142-21276295)
chr8 (120-174)||(30264828-30264882)
chr8 (120-172)||(7253157-7253209)
chr8 (120-172)||(32965911-32965963)
chr8 (118-175)||(27990151-27990208)
chr8 (118-175)||(28047453-28047510)
chr8 (122-167)||(32242465-32242510)
[»] chr7 (5 HSPs)
chr7 (120-176)||(26762384-26762440)
chr7 (125-175)||(2704149-2704199)
chr7 (122-173)||(328171-328222)
chr7 (120-163)||(35241419-35241462)
chr7 (121-167)||(7702586-7702632)
[»] scaffold0040 (1 HSPs)
scaffold0040 (120-172)||(68253-68305)
[»] chr4 (6 HSPs)
chr4 (120-172)||(33017689-33017741)
chr4 (121-172)||(35346300-35346351)
chr4 (120-172)||(33433721-33433773)
chr4 (120-168)||(11882039-11882087)
chr4 (121-167)||(48401213-48401259)
chr4 (122-167)||(34617591-34617636)
[»] chr3 (9 HSPs)
chr3 (125-172)||(21219663-21219710)
chr3 (120-178)||(22004058-22004116)
chr3 (120-178)||(22011575-22011633)
chr3 (120-173)||(51986791-51986844)
chr3 (120-160)||(30593705-30593745)
chr3 (120-165)||(27657933-27657978)
chr3 (120-173)||(27949173-27949226)
chr3 (120-167)||(49794746-49794793)
chr3 (121-167)||(21218516-21218562)
[»] chr5 (2 HSPs)
chr5 (121-172)||(16049622-16049673)
chr5 (125-173)||(6383753-6383801)
[»] chr1 (3 HSPs)
chr1 (120-172)||(47125601-47125653)
chr1 (120-152)||(39156791-39156823)
chr1 (123-167)||(46908237-46908281)
[»] chr2 (4 HSPs)
chr2 (121-167)||(3096900-3096946)
chr2 (121-167)||(41055764-41055810)
chr2 (120-172)||(2279306-2279358)
chr2 (120-172)||(4567295-4567347)


Alignment Details
Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 21276142 - 21276295
Alignment:
Q  16 atcctaacaagtcacaaaacctacacatctcagccattaaaaagcctttacatacatccaatggttgaaatacactttacnnnnnnnnnnnnnnnnnnnn 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                        
T  21276142 atcctaacaagtcacaaaacctacacatctcagccattaaaaagcctttacatacatccaatggttgaaatacactttac-aaaaaacaaaaacaaaaaa 21276240  T
Q  116 ncattcaagtctcctacggtaggagacccaaagaggttgcctaccgtagcctatg 170  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21276241 acattcaagtctcctacggtaggagacccaaagaggttgcctaccgtagcctatg 21276295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 174
Target Start/End: Original strand, 30264828 - 30264882
Alignment:
Q  120 tcaagtctcctacggtaggagacccaaagaggttgcctaccgtagcctatgccat 174  Q
    ||||| |||||||||||||||||||| | ||||||||||||||||||| ||||||    
T  30264828 tcaagcctcctacggtaggagacccataaaggttgcctaccgtagcctttgccat 30264882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 7253157 - 7253209
Alignment:
Q  120 tcaagtctcctacggtaggagacccaaagaggttgcctaccgtagcctatgcc 172  Q
    |||||||||||||||||||||||| |||||| | |||||||||||||| ||||    
T  7253157 tcaagtctcctacggtaggagacctaaagagatcgcctaccgtagcctttgcc 7253209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 32965963 - 32965911
Alignment:
Q  120 tcaagtctcctacggtaggagacccaaagaggttgcctaccgtagcctatgcc 172  Q
    |||||||||||||||||||||||| || ||| |||||||||||||||| ||||    
T  32965963 tcaagtctcctacggtaggagacctaatgagattgcctaccgtagcctttgcc 32965911  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 27990151 - 27990208
Alignment:
Q  118 attcaagtctcctacggtaggagacccaaagaggttgcctaccgtagcctatgccatc 175  Q
    |||||||||||||||||||||||||| || |||||  || |||||||||| |||||||    
T  27990151 attcaagtctcctacggtaggagacctaacgaggtctcccaccgtagcctttgccatc 27990208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 28047453 - 28047510
Alignment:
Q  118 attcaagtctcctacggtaggagacccaaagaggttgcctaccgtagcctatgccatc 175  Q
    |||||||||||||||||||||||||| || |||||  || |||||||||| |||||||    
T  28047453 attcaagtctcctacggtaggagacctaacgaggtctcccaccgtagcctttgccatc 28047510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 32242510 - 32242465
Alignment:
Q  122 aagtctcctacggtaggagacccaaagaggttgcctaccgtagcct 167  Q
    |||||||||||||||||||||| ||||||||  || ||||||||||    
T  32242510 aagtctcctacggtaggagacctaaagaggtctcccaccgtagcct 32242465  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 26762384 - 26762440
Alignment:
Q  120 tcaagtctcctacggtaggagacccaaagaggttgcctaccgtagcctatgccatct 176  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  26762384 tcaagtctcctacggtaggagacccaaagaggtcgcctaccgtagcctttgccatct 26762440  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 2704199 - 2704149
Alignment:
Q  125 tctcctacggtaggagacccaaagaggttgcctaccgtagcctatgccatc 175  Q
    ||||||||| ||||||||| |||||||| |||||||||||||| |||||||    
T  2704199 tctcctacgataggagacctaaagaggtcgcctaccgtagcctttgccatc 2704149  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 173
Target Start/End: Complemental strand, 328222 - 328171
Alignment:
Q  122 aagtctcctacggtaggagacccaaagaggttgcctaccgtagcctatgcca 173  Q
    |||||||||||||||||||||| ||||||||  || |||||||||| |||||    
T  328222 aagtctcctacggtaggagacctaaagaggtctcccaccgtagcctttgcca 328171  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 35241419 - 35241462
Alignment:
Q  120 tcaagtctcctacggtaggagacccaaagaggttgcctaccgta 163  Q
    |||||||||||||| || |||||| |||||||||||||||||||    
T  35241419 tcaagtctcctacgataagagacctaaagaggttgcctaccgta 35241462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 7702586 - 7702632
Alignment:
Q  121 caagtctcctacggtaggagacccaaagaggttgcctaccgtagcct 167  Q
    ||||||||||||||||||||||| || |||||  |||||||||||||    
T  7702586 caagtctcctacggtaggagacctaaggaggtcacctaccgtagcct 7702632  T

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Target: scaffold0040 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 68305 - 68253
Alignment:
Q  120 tcaagtctcctacggtaggagacccaaagaggttgcctaccgtagcctatgcc 172  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  68305 tcaagtctcctacggtaggagacctaaagaggtcgcctaccgtagcctatgcc 68253  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 33017741 - 33017689
Alignment:
Q  120 tcaagtctcctacggtaggagacccaaagaggttgcctaccgtagcctatgcc 172  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  33017741 tcaagtctcctacggtaggagacccaaagaggtcgcctaccgtagcctttgcc 33017689  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 35346351 - 35346300
Alignment:
Q  121 caagtctcctacggtaggagacccaaagaggttgcctaccgtagcctatgcc 172  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||| ||||    
T  35346351 caagtctcctacggtaggagacctaaagaggtcgcctaccgtagcctttgcc 35346300  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 33433721 - 33433773
Alignment:
Q  120 tcaagtctcctacggtaggagacccaaagaggttgcctaccgtagcctatgcc 172  Q
    ||||||||||||||||||||||||||||||||| ||||  |||||||| ||||    
T  33433721 tcaagtctcctacggtaggagacccaaagaggtcgcctgtcgtagcctttgcc 33433773  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 11882087 - 11882039
Alignment:
Q  120 tcaagtctcctacggtaggagacccaaagaggttgcctaccgtagccta 168  Q
    ||||||||||| |||||||||||| |||||| | |||||||||||||||    
T  11882087 tcaagtctcctgcggtaggagacctaaagagatcgcctaccgtagccta 11882039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 48401259 - 48401213
Alignment:
Q  121 caagtctcctacggtaggagacccaaagaggttgcctaccgtagcct 167  Q
    ||||||||||||||||||||||| || |||||  |||||||||||||    
T  48401259 caagtctcctacggtaggagacctaaggaggtcacctaccgtagcct 48401213  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 34617591 - 34617636
Alignment:
Q  122 aagtctcctacggtaggagacccaaagaggttgcctaccgtagcct 167  Q
    |||||||||||||||||||||| || |||||  |||||||||||||    
T  34617591 aagtctcctacggtaggagacctaaggaggtcacctaccgtagcct 34617636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 172
Target Start/End: Complemental strand, 21219710 - 21219663
Alignment:
Q  125 tctcctacggtaggagacccaaagaggttgcctaccgtagcctatgcc 172  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  21219710 tctcctacggtaggagacctaaagaggttgcctaccgtagcctttgcc 21219663  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 22004058 - 22004116
Alignment:
Q  120 tcaagtctcctacggtaggagacccaaagaggttgcctaccgtagcctatgccatctat 178  Q
    |||||||||||||||||||||||| ||||||||  || |||||||||| ||||||||||    
T  22004058 tcaagtctcctacggtaggagacctaaagaggtctcccaccgtagcctttgccatctat 22004116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 22011575 - 22011633
Alignment:
Q  120 tcaagtctcctacggtaggagacccaaagaggttgcctaccgtagcctatgccatctat 178  Q
    |||||||||||||||||||||||| ||||||||  || |||||||||| ||||||||||    
T  22011575 tcaagtctcctacggtaggagacctaaagaggtctcccaccgtagcctttgccatctat 22011633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 51986791 - 51986844
Alignment:
Q  120 tcaagtctcctacggtaggagacccaaagaggttgcctaccgtagcctatgcca 173  Q
    ||||||||||||||||||||||||||||||| | | |||||||||||| |||||    
T  51986791 tcaagtctcctacggtaggagacccaaagagatcggctaccgtagcctttgcca 51986844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 30593745 - 30593705
Alignment:
Q  120 tcaagtctcctacggtaggagacccaaagaggttgcctacc 160  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  30593745 tcaagtctcctacggtaggagacctaaagaggttgcctacc 30593705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 27657933 - 27657978
Alignment:
Q  120 tcaagtctcctacggtaggagacccaaagaggttgcctaccgtagc 165  Q
    |||||||||||||||||||||||| ||||||||  |||||||||||    
T  27657933 tcaagtctcctacggtaggagacctaaagaggtctcctaccgtagc 27657978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 27949173 - 27949226
Alignment:
Q  120 tcaagtctcctacggtaggagacccaaagaggttgcctaccgtagcctatgcca 173  Q
    |||||||||||||||||||||||| ||||||||  || |||||||||| |||||    
T  27949173 tcaagtctcctacggtaggagacctaaagaggtctcccaccgtagcctttgcca 27949226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 49794746 - 49794793
Alignment:
Q  120 tcaagtctcctacggtaggagacccaaagaggttgcctaccgtagcct 167  Q
    |||||||||||||||||||||||||  | ||||||| |||||||||||    
T  49794746 tcaagtctcctacggtaggagacccgtaaaggttgcttaccgtagcct 49794793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 21218516 - 21218562
Alignment:
Q  121 caagtctcctacggtaggagacccaaagaggttgcctaccgtagcct 167  Q
    ||||||||||||||||||||||| || |||||  |||||||||||||    
T  21218516 caagtctcctacggtaggagacctaaggaggtcacctaccgtagcct 21218562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 16049673 - 16049622
Alignment:
Q  121 caagtctcctacggtaggagacccaaagaggttgcctaccgtagcctatgcc 172  Q
    |||||||||||||| |||||||| ||||||||| ||||||||||||| ||||    
T  16049673 caagtctcctacggcaggagacctaaagaggttacctaccgtagcctttgcc 16049622  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 6383753 - 6383801
Alignment:
Q  125 tctcctacggtaggagacccaaagaggttgcctaccgtagcctatgcca 173  Q
    ||||||||||||||||||| |||||||   ||||||||||||| |||||    
T  6383753 tctcctacggtaggagacctaaagaggcctcctaccgtagcctttgcca 6383801  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 47125601 - 47125653
Alignment:
Q  120 tcaagtctcctacggtaggagacccaaagaggttgcctaccgtagcctatgcc 172  Q
    |||||| ||||||||||| |||||||||||||| ||||||| |||||| ||||    
T  47125601 tcaagtatcctacggtagaagacccaaagaggtcgcctaccatagcctttgcc 47125653  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 39156823 - 39156791
Alignment:
Q  120 tcaagtctcctacggtaggagacccaaagaggt 152  Q
    |||||||||||||||||||||||| ||||||||    
T  39156823 tcaagtctcctacggtaggagacctaaagaggt 39156791  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 167
Target Start/End: Original strand, 46908237 - 46908281
Alignment:
Q  123 agtctcctacggtaggagacccaaagaggttgcctaccgtagcct 167  Q
    ||||||||||||||||||||| || |||||  |||||||||||||    
T  46908237 agtctcctacggtaggagacctaaggaggtcacctaccgtagcct 46908281  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 3096946 - 3096900
Alignment:
Q  121 caagtctcctacggtaggagacccaaagaggttgcctaccgtagcct 167  Q
    ||||||||||||||||||||||| || |||||  |||||||||||||    
T  3096946 caagtctcctacggtaggagacctaaggaggtcacctaccgtagcct 3096900  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 41055810 - 41055764
Alignment:
Q  121 caagtctcctacggtaggagacccaaagaggttgcctaccgtagcct 167  Q
    ||||||||||||||||||||||| || |||||  |||||||||||||    
T  41055810 caagtctcctacggtaggagacctaaggaggtcacctaccgtagcct 41055764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Complemental strand, 2279358 - 2279306
Alignment:
Q  120 tcaagtctcctacggtaggagacccaaagaggttgcctaccgtagcctatgcc 172  Q
    ||||||||| |||||||||||||| ||||||||  || |||||||||| ||||    
T  2279358 tcaagtctcatacggtaggagacctaaagaggtctcccaccgtagcctttgcc 2279306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 4567295 - 4567347
Alignment:
Q  120 tcaagtctcctacggtaggagacccaaagaggttgcctaccgtagcctatgcc 172  Q
    |||||||||||||||||||||||| ||| ||||  || |||||||||| ||||    
T  4567295 tcaagtctcctacggtaggagacctaaaaaggtctcccaccgtagcctttgcc 4567347  T

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