View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17705_low_17 (Length: 270)
Name: NF17705_low_17
Description: NF17705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17705_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 41027082 - 41027202
Alignment:
| Q |
13 |
aaaatctaataactctaagcagagaggatttgcatttaaactcatcttgttcaagaagttttctaaatatgattattttatctctaattcatttatttag |
112 |
Q |
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| T |
41027082 |
aaaatctaataactctaagtagagaggatttgcatttaaactcatcttgttcaagaagttttctaaatatgattattttatctctaattaatttatttag |
41027181 |
T |
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| Q |
113 |
acataagaaattaattaacgt |
133 |
Q |
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| T |
41027182 |
acataggaaattaattaacgt |
41027202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 163 - 270
Target Start/End: Original strand, 41027202 - 41027309
Alignment:
| Q |
163 |
ttgctaaaataagaaattagtgttttattttagataagactattgctatataacccaacagttatttttccgataaattcacgagataacatattctcaa |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | ||| |||||||||| ||||||| |
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| T |
41027202 |
ttgctaaaataagaaattagtgttttattttagataagactattgctatataacctgacagttattttttcgatagactcatgagataacatgttctcaa |
41027301 |
T |
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| Q |
263 |
tattttct |
270 |
Q |
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|||||||| |
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| T |
41027302 |
tattttct |
41027309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 13775939 - 13775903
Alignment:
| Q |
110 |
tagacataagaaattaattaacgtggctgatagttta |
146 |
Q |
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| T |
13775939 |
tagacataagaaattaattagtgtggctgatagttta |
13775903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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