View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17705_low_18 (Length: 269)
Name: NF17705_low_18
Description: NF17705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17705_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 114920 - 115147
Alignment:
| Q |
1 |
tttgtttggcttgtaacgagtttttggtgagggagaaggaaagtcctaccaaatccaaatgatactattcaatatatatcaaacaaaatgaaagcactgt |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
114920 |
tttgtttggcttgtaacgagtttttggtaagggagaaggaaagtcctaccaaatccaaatgatactattcaatatatatcaaacaaaatgaaagcactgt |
115019 |
T |
|
| Q |
101 |
tctgttgtgctgcggtgacttttattaattaccgaacaaggtgaaatgataatgatttataaagaaaagtcctagcggaaacggaaggatatcctaagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
115020 |
tctgttgtgctgcggtgacttttattaattaccgaacaaggtgacatgataatgatttataaagaaaagtcctagcggaaacggaaggatatcctaagaa |
115119 |
T |
|
| Q |
201 |
tagtaatatactttattttttattatta |
228 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
115120 |
tagtaatatactttattttttattatta |
115147 |
T |
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