View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17705_low_2 (Length: 602)
Name: NF17705_low_2
Description: NF17705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17705_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Original strand, 51121463 - 51122046
Alignment:
| Q |
1 |
attgcatatatacttgttaattgtaacacacttttttctgctgttacttttatctgcttaagtatttttccttcgtaagatcaaatctaccaaacaatgg |
100 |
Q |
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| T |
51121463 |
attgcatatatacttgttaattgtaacacacttttttctgctgttacttttatctgcttaagcatttttcctacgtaagatcaaatctaccaaacaatgg |
51121562 |
T |
|
| Q |
101 |
tgtgtctcattctatcattttccgctttttcttttccatgc--atggtttagattacattttgattacaacatgtgacgtaatgtactagacctggtctt |
198 |
Q |
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| T |
51121563 |
tgtgtctcattctataattttccgccttttcttttccatgcttatggtttagattacattttgattacaacatgtgacgtaatgtactagacctggtctt |
51121662 |
T |
|
| Q |
199 |
tttctttggaatatacaccaatcaatattgattacatattcttctacatatgatcaaatctaccaaacaatggaatggaaatatacatattctcctacat |
298 |
Q |
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| T |
51121663 |
tttctttggaatatacaccaatcaatattgattacatattcttctacatatgatcaaatctaccaaacaatggaatggaaatatacatattctcctacat |
51121762 |
T |
|
| Q |
299 |
aaaaaatttcacttgcatcaatcattagaaatttgaaaagnnnnnnnggtcacttgtaactaaacgtatgtggttataagtgaaataaactttgagtggc |
398 |
Q |
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| T |
51121763 |
aaaaaatttcacttgcatcaatcattagaaatttgaaaagaaaaaaaggtcacttgtaactaaacatatgtggttataagtgaaataaacttttagtggc |
51121862 |
T |
|
| Q |
399 |
caagaaggtcnnnnnnnnnnnnnnnnnnnnnnntcatttttcatgattagaataggaaaaatttagagaatgttttctcctttgtatagtgattgtgttt |
498 |
Q |
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| T |
51121863 |
caagaaggtcaaaaaacaataaaaatagaaaaatcatttttcatgattagaataggaaaaatttagagaatgttttctaatttgtatagtgattgtgttt |
51121962 |
T |
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| Q |
499 |
taaatgtcttgccttttcactttgcaagtaaatctttccttgatgttgtctggtatgtcatttcatcttatcagtatatggtgc |
582 |
Q |
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| T |
51121963 |
taaatgtcttgccttttcactttgcaggtaaatctttccttgatgttgtctggtatgtcatttcatcttatcagtatatggtgc |
51122046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 461 - 537
Target Start/End: Original strand, 45245966 - 45246042
Alignment:
| Q |
461 |
ttagagaatgttttctcctttgtatagtgattgtgttttaaatgtcttgccttttcactttgcaagtaaatctttcc |
537 |
Q |
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| T |
45245966 |
ttagagaatgttttctcttttgtatattgattgtgttttaaatgtcttgccttttcactctgcaggtatatgtttcc |
45246042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 467 - 518
Target Start/End: Original strand, 48885966 - 48886017
Alignment:
| Q |
467 |
aatgttttctcctttgtatagtgattgtgttttaaatgtcttgccttttcac |
518 |
Q |
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| T |
48885966 |
aatgttttctcctttgtatagtgattgtcttttaaatgtctttccttttcac |
48886017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 535 - 572
Target Start/End: Complemental strand, 39016718 - 39016681
Alignment:
| Q |
535 |
tccttgatgttgtctggtatgtcatttcatcttatcag |
572 |
Q |
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| T |
39016718 |
tccttgatgttgtctggtatgtcatttcatcttatcag |
39016681 |
T |
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