View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17705_low_20 (Length: 257)
Name: NF17705_low_20
Description: NF17705
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17705_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 6 - 237
Target Start/End: Original strand, 5038237 - 5038463
Alignment:
| Q |
6 |
agcaacacagaaaccagaaagtatgaggagataaaattcaatccagaccctatcaaaccaaggataaggcctatctcgaagcacttttaaaatctaaaaa |
105 |
Q |
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| T |
5038237 |
agcaccacaaaaaccagaaagtatgaggagataaaagtcaattcaaaccctatcaaaccaaggataaggcctatctcgaagcacttttaaaatgtaaaaa |
5038336 |
T |
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| Q |
106 |
agacccataagatatctttaaaaaccatttttaagaggaggatttaattctattcaattcacgaattgttcaacacatagaatcttgtcgtcatagaaga |
205 |
Q |
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| T |
5038337 |
agacccataagatatctttaaaaaccatttttaagaggaggatttaattct-----attcacgaattgttcaacacttagaatcttgtcgtcatagaaga |
5038431 |
T |
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| Q |
206 |
catcatcatttccaaaagacatgaaaacttaa |
237 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
5038432 |
catcatcatttccaaaagacatgaaaacttaa |
5038463 |
T |
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